A wavelet based method for denoising of biomedical signal
21 Mar 2012-pp 278-283
TL;DR: This paper presents Daubechies wavelet analysis method with a decomposition tree of level 5 for analysis of noisy ECG signals and shows that, on contrast with traditional methods wavelet method can achieve optimal denoising of ECG signal.
Abstract: Noise removal of Electrocardiogram has always been a subject of wide research. ECG signals change their statistical properties over time. Wavelet transform is the most powerful tool for analyzing the non-stationary signals. This paper shows that how it is useful in denoising non-stationary signals e.g. The ECG signals. We considered two types of ECG signal, without additional noise and corrupted by powerline interference and we realized the signal's denoising using wavelet filtering. The ECG data is taken from standard MIT-BIH Arrhythmia database, while noise signal is generated and added to the original signal using instructions in MATLAB environment. In this paper, we present Daubechies wavelet analysis method with a decomposition tree of level 5 for analysis of noisy ECG signals. The implementation includes the procedures of signal decomposition and reconstruction with hard and soft thresholding. Furthermore quantitative study of result evaluation has been done based on Signal to Noise Ratio (SNR). The results show that, on contrast with traditional methods wavelet method can achieve optimal denoising of ECG signal.
Citations
More filters
TL;DR: The proposed methods for baseline wander removal and powerline interference removal from electrocardiogram (ECG) signals have been shown to preserve ECG shapes characteristic of heart abnormalities.
85 citations
TL;DR: A new approach is used to filter baseline wander and power line interference from the ECG signal using empirical wavelet transform (EWT), which is a new method used to compute the building modes of a given signal.
Abstract: This paper presents new methods for baseline wander correction and powerline interference reduction in electrocardiogram (ECG) signals using empirical wavelet transform (EWT). During data acquisition of ECG signal, various noise sources such as powerline interference, baseline wander and muscle artifacts contaminate the information bearing ECG signal. For better analysis and interpretation, the ECG signal must be free of noise. In the present work, a new approach is used to filter baseline wander and power line interference from the ECG signal. The technique utilized is the empirical wavelet transform, which is a new method used to compute the building modes of a given signal. Its performance as a filter is compared to the standard linear filters and empirical mode decomposition.The results show that EWT delivers a better performance.
67 citations
Cites background from "A wavelet based method for denoisin..."
...However there may be an overlap between baseline Wander noise and low frequency component of an ECG signal [20]....
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18 Mar 2016
TL;DR: A survey of various types of various denoising approaches emerged over recent years has been presented and recent developments are discussed along with comparatives studies.
Abstract: Unwanted signal contents always degrades the quality of ECG signal. Since ECG is a non-stationary signal, noise removal always is a complicated task. ECG signal is a raw material for diagnosis and analysis of almost all heart diseases and hence demands a good quality. A survey of various types of various denoising approaches emerged over recent years has been presented in this paper. FIR and IIR filtering, low and high frequency noise removal techniques, Quadrature filtering, Adaptive noise cancellation techniques, Non-Local Means denoising techniques (NLM), Empirical Mode Decomposition(EMD), Variational Mode Decomposition (VMD), Wavelet transform denoising methods and recent developments are discussed along with comparatives studies.
40 citations
Cites methods from "A wavelet based method for denoisin..."
...The work in [27] to remove power line interference and baseline wander from ECG signal employed Daubechies wavelet with decomposition tree of level up to 5 is used for the analysis....
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31 Dec 2020
TL;DR: Various signal and image processing techniques that have been developed/implemented in PAI are reviewed to highlight the importance of image computing in photoacoustic imaging.
Abstract: Photoacoustic imaging (PAI) is a powerful imaging modality that relies on the PA effect. PAI works on the principle of electromagnetic energy absorption by the exogenous contrast agents and/or endogenous molecules present in the biological tissue, consequently generating ultrasound waves. PAI combines a high optical contrast with a high acoustic spatiotemporal resolution, allowing the non-invasive visualization of absorbers in deep structures. However, due to the optical diffusion and ultrasound attenuation in heterogeneous turbid biological tissue, the quality of the PA images deteriorates. Therefore, signal and image-processing techniques are imperative in PAI to provide high-quality images with detailed structural and functional information in deep tissues. Here, we review various signal and image processing techniques that have been developed/implemented in PAI. Our goal is to highlight the importance of image computing in photoacoustic imaging.
38 citations
Cites background or methods from "A wavelet based method for denoisin..."
...The signals from the skin surface and the blood vessels were smaller relative to the background noise when 10 SVD components were used....
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...Another decomposition method is single value decomposition (SVD)....
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...SVD [91] • Very useful in accurately removing laser induced noise • Comparable to averaging but faster May not work well with low SNR signals...
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...SVD [91] • Very useful in accurately removing laser induced noise • Comparable to averaging but faster May not work well with low SNR signals Figure 6....
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...Adaptive filtering [61] No prior signal information needed Computationally exhaustive LPFSC [66] Clean PA signal can be fully preserved Works only with SNR > –15db DPARS [88] Improves SNR of deep structures Depth discrimination is poor in C scan images DCT [93,95,96] Easy to implement • Difficult to choose optimal threshold • Computationally exhaustive MODWT [104] Superior in performance as compare to DCT Difficult to segregate noise from PA signal EMD [114] Better than DWT and Band-pass filtering Makes wrong assumption that lower IMFs contains major part of the signal and high IMFs are highly dominated by noise SVD [91] • Very useful in accurately removing laser induced noise • Comparable to averaging but faster May not work well with low SNR signals A detailed summary of the reviewed pre/post-processing methods and their corresponding advantages and disadvantages are provided in Table 1....
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TL;DR: In this article, the authors present the results of a thorough review of the use of EEG systems for the detection of dementia diseases and compare the relationship of selected parameters with the efficiency obtained.
Abstract: Dementia diseases are increasing rapidly, according to the World Health Organization (WHO), becoming an alarming problem for the health sector. The electroencephalogram (EEG) is a non-invasive test that records brain electrical activity and has a wide field of applications in the medical area, one of which is the detection of neurodegenerative diseases. The aim of this work is to present the results of a thorough review of the use of EEG systems for the detection of dementia diseases. Around 82 papers published between 2009 and 2020 were reviewed and compared obtaining data such as sampling time, number of electrodes, the most popular processing, classification, and validation techniques, as well as an analysis of the reported results. The relationship of the selected parameters with the efficiency obtained is shown. Some more common combinations in the reviewed papers that demonstrated to have reliability levels greater than 90%, and details to be considered at each stage of the process. An overview of the most commonly used classification tools and processing techniques is also described.
29 citations
References
More filters
TL;DR: The authors prove two results about this type of estimator that are unprecedented in several ways: with high probability f/spl circ/*/sub n/ is at least as smooth as f, in any of a wide variety of smoothness measures.
Abstract: Donoho and Johnstone (1994) proposed a method for reconstructing an unknown function f on [0,1] from noisy data d/sub i/=f(t/sub i/)+/spl sigma/z/sub i/, i=0, ..., n-1,t/sub i/=i/n, where the z/sub i/ are independent and identically distributed standard Gaussian random variables. The reconstruction f/spl circ/*/sub n/ is defined in the wavelet domain by translating all the empirical wavelet coefficients of d toward 0 by an amount /spl sigma//spl middot//spl radic/(2log (n)/n). The authors prove two results about this type of estimator. [Smooth]: with high probability f/spl circ/*/sub n/ is at least as smooth as f, in any of a wide variety of smoothness measures. [Adapt]: the estimator comes nearly as close in mean square to f as any measurable estimator can come, uniformly over balls in each of two broad scales of smoothness classes. These two properties are unprecedented in several ways. The present proof of these results develops new facts about abstract statistical inference and its connection with an optimal recovery model. >
9,359 citations
TL;DR: An adaptive, data-driven threshold for image denoising via wavelet soft-thresholding derived in a Bayesian framework, and the prior used on the wavelet coefficients is the generalized Gaussian distribution widely used in image processing applications.
Abstract: The first part of this paper proposes an adaptive, data-driven threshold for image denoising via wavelet soft-thresholding. The threshold is derived in a Bayesian framework, and the prior used on the wavelet coefficients is the generalized Gaussian distribution (GGD) widely used in image processing applications. The proposed threshold is simple and closed-form, and it is adaptive to each subband because it depends on data-driven estimates of the parameters. Experimental results show that the proposed method, called BayesShrink, is typically within 5% of the MSE of the best soft-thresholding benchmark with the image assumed known. It also outperforms SureShrink (Donoho and Johnstone 1994, 1995; Donoho 1995) most of the time. The second part of the paper attempts to further validate claims that lossy compression can be used for denoising. The BayesShrink threshold can aid in the parameter selection of a coder designed with the intention of denoising, and thus achieving simultaneous denoising and compression. Specifically, the zero-zone in the quantization step of compression is analogous to the threshold value in the thresholding function. The remaining coder design parameters are chosen based on a criterion derived from Rissanen's minimum description length (MDL) principle. Experiments show that this compression method does indeed remove noise significantly, especially for large noise power. However, it introduces quantization noise and should be used only if bitrate were an additional concern to denoising.
2,917 citations
TL;DR: In this review, the emerging role of the wavelet transform in the interrogation of the ECG is discussed in detail, where both the continuous and the discrete transform are considered in turn.
Abstract: The wavelet transform has emerged over recent years as a powerful time-frequency analysis and signal coding tool favoured for the interrogation of complex nonstationary signals. Its application to biosignal processing has been at the forefront of these developments where it has been found particularly useful in the study of these, often problematic, signals: none more so than the ECG. In this review, the emerging role of the wavelet transform in the interrogation of the ECG is discussed in detail, where both the continuous and the discrete transform are considered in turn.
794 citations
Book•
01 Jan 2009
TL;DR: This paper presents a meta-anatomy of Biomedical Signal Analysis, focusing on the role of ECG waves in the development of central nervous system diseases and their role in the management of disease progression.
Abstract: Dedication. Preface. About the Author. Acknowledgments. Symbols and Abbreviations. 1 Introduction to Biomedical Signals. 1.1 The Nature of Biomedical Signals. 1.2 Examples of Biomedical Signals. 1.3 Objectives of Biomedical Signal Analysis. 1.4 Difficulties in Biomedical Signal Analysis. 1.5 Computer-aided Diagnosis. 1.6 Remarks. 1.7 Study Questions and Problems. 1.8 Laboratory Exercises and Projects. 2 Concurrent, Coupled, and Correlated Processes. 2.1 Problem Statement. 2.2 Illustration of the Problem with Case-studies. 2.3 Application: Segmentation of the PCG. 2.4 Remarks. 2.5 Study Questions and Problems. 2.6 Laboratory Exercises and Projects. 3 Filtering for Removal of Artifacts. 3.1 Problem Statement. 3.2 Illustration of the Problem with Case-studies. 3.3 Time-domain Filters. 3.4 Frequency-domain Filters. 3.5 Optimal Filtering: The Wiener Filter. 3.6 Adaptive Filters for Removal of Interference. 3.7 Selecting an Appropriate Filter. 3.8 Application: Removal of Artifacts in the ECG. 3.9 Application: Maternal - Fetal ECG. 3.10 Application: Muscle-contraction Interference. 3.11 Remarks. 3.12 Study Questions and Problems. 3.13 Laboratory Exercises and Projects. 4 Event Detection. 4.1 Problem Statement. 4.2 Illustration of the Problem with Case-studies. 4.3 Detection of Events and Waves. 4.4 Correlation Analysis of EEG channels. 4.5 Cross-spectral Techniques. 4.6 The Matched Filter. 4.7 Detection of the P Wave. 4.8 Homomorphic Filtering. 4.9 Application: ECG Rhythm Analysis. 4.10 Application: Identification of Heart Sounds. 4.11 Application: Detection of the Aortic Component of S2. 4.12 Remarks. 4.13 Study Questions and Problems. 4.14 Laboratory Exercises and Projects. 5 Waveshape and Waveform Complexity. 5.1 Problem Statement. 5.2 Illustration of the Problem with Case-studies. 5.3 Analysis of Event-related Potentials. 5.4 Morphological Analysis of ECG Waves. 5.5 Envelope Extraction and Analysis. 5.6 Analysis of Activity. 5.7 Application: Normal and Ectopic ECG Beats. 5.8 Application: Analysis of Exercise ECG. 5.9 Application: Analysis of Respiration. 5.10 Application: Correlates of Muscular Contraction. 5.11 Remarks. 5.12 Study Questions and Problems. 5.13 Laboratory Exercises and Projects. 6 Frequency-domain Characterization. 6.1 Problem Statement. 6.2 Illustration of the Problem with Case-studies. 6.3 The Fourier Spectrum. 6.4 Estimation of the Power Spectral Density Function. 6.5 Measures Derived from PSDs. 6.6 Application: Evaluation of Prosthetic Valves. 6.7 Remarks. 6.8 Study Questions and Problems. 6.9 Laboratory Exercises and Projects. 7 Modeling Biomedical Systems. 7.1 Problem Statement. 7.2 Illustration of the Problem. 7.3 Point Processes. 7.4 Parametric System Modeling. 7.5 Autoregressive or All-pole Modeling. 7.6 Pole-zero Modeling. 7.7 Electromechanical Models of Signal Generation. 7.8 Application: Heart-rate Variability. 7.9 Application: Spectral Modeling and Analysis of PCG Signals. 7.10 Application: Coronary Artery Disease. 7.11 Remarks. 7.12 Study Questions and Problems. 7.13 Laboratory Exercises and Projects. 8 Analysis of Nonstationary Signals. 8.1 Problem Statement. 8.2 Illustration of the Problem with Case-studies. 8.3 Time-variant Systems. 8.4 Fixed Segmentation. 8.5 Adaptive Segmentation. 8.6 Use of Adaptive Filters for Segmentation. 8.7 Application: Adaptive Segmentation of EEG Signals. 8.8 Application: Adaptive Segmentation of PCG Signals. 8.9 Application: Time-varying Analysis of Heart-rate Variability. 8.10 Remarks. 8.11 Study Questions and Problems. 8.12 Laboratory Exercises and Projects. 9 Pattern Classification and Diagnostic Decision. 9.1 Problem Statement. 9.2 Illustration of the Problem with Case-studies. 9.3 Pattern Classification. 9.4 Supervised Pattern Classification. 9.5 Unsupervised Pattern Classification. 9.6 Probabilistic Models and Statistical Decision. 9.7 Logistic Regression Analysis. 9.8 The Training and Test Steps. 9.9 Neural Networks. 9.10 Measures of Diagnostic Accuracy and Cost. 9.11 Reliability of Classifiers and Decisions. 9.12 Application: Normal versus Ectopic ECG Beats. 9.13 Application: Detection of Knee-joint Cartilage Pathology. 9.14 Remarks. 9.15 Study Questions and Problems. 9.16 Laboratory Exercises and Projects. References. Index.
674 citations
Book•
01 Jan 2001TL;DR: Wavelets and wavelet thresholding Smoothing non-equidistantly spaced data using second generation wavelets and thresholding and Bayesian correction with geometrical priors for image noise reduction.
Abstract: Wavelets and wavelet thresholding.- The minimum mean squared error threshold.- Estimating the minimum MSE threshold.- Thresholding and GCV applicability in more realistic situations.- Bayesian correction with geometrical priors for image noise reduction.- Smoothing non-equidistantly spaced data using second generation wavelets and thresholding.
403 citations