A whole-genome assembly of the domestic cow, Bos taurus
Citations
872 citations
Cites background from "A whole-genome assembly of the dome..."
...Species name Common name UCSC version Publication Homo sapiens Human hg18 (23) Pan troglodytes Chimpanzee panTro2 (190) Macaca mulatta Rhesus rheMac2 (186) Otolemur garnettii Bushbaby otoGar1 (46) Tupaia belangeri tree shrew tupBel1 (46) Mus musculus Mouse mm8 (188) Rattus norvegicus Rat rn4 (192) Cavia porcellus Guinea pig cavPor2 (46) Oryctolagus cuniculus Rabbit oryCun1 (46) Sorex araneus Shrew sorAra1 (46) Erinaceus europaeus Hedgehog eriEur1 (46) Canis lupus Dog canFam2 (46) Felis catus Cat felCat3 (118) Equus caballus Horse equCab1 (184) Bos taurus Cow bosTau3 (183) Dasypus novemcinctus Armadillo dasNov1 (46) Loxodonta africana Elephant loxAfr1 (46) Echinops telfairi Tenrec echTel1 (46)...
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...7 (183) Callithrix jacchus marmoset Ensembl 69 29K/0....
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710 citations
Cites background from "A whole-genome assembly of the dome..."
...1/bosTau6) from the Center for Bioinformatics and Computational Biology, University of Maryland (17); the microbat (Myotis lucifugus) draft assembly (Broad Myoluc2....
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690 citations
690 citations
Cites background from "A whole-genome assembly of the dome..."
...Zimin et al. 2009 Identification of the genetic disorder: using combined an array-based sequence capture and massively parallel sequencing approach causative mutation of Bovine Arachnomelia was identified in bovine sulfite oxidase (SUOX) gene....
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...…animals genome sequencing and assembling, a series of publications and studies were published(Table 3), for bovine (Liu 2009; Elsik et al. 2009; Zimin et al. 2009), porcine (Wiedmann et al. 2008; Amaral et al. 2009; Ramos et al. 2009; Isom et al. 2010; Leifer et al. 2010), sheep (Archibald et…...
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651 citations
References
5,205 citations
"A whole-genome assembly of the dome..." refers background in this paper
...Background Seven years after the first whole-genome assembly of the human genome [1], sequencing and assembly of mammalian genomes has become almost routine....
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4,886 citations
"A whole-genome assembly of the dome..." refers methods in this paper
...The MUMmer package [14] was used for these alignments and for the Cmap alignments....
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...First, all cow scaffolds were aligned to the human genome using nucmer [14] with its maximal unique match (mum) option in order to avoid alignments of repetitive sequence....
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4,229 citations
"A whole-genome assembly of the dome..." refers methods in this paper
...Messenger RNA alignment Known full-length gene sequences were downloaded from the RefSeq project at NCBI (release date: November 10, 2008) [18]....
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3,989 citations
2,058 citations
"A whole-genome assembly of the dome..." refers methods in this paper
...Alignments were also produced with an alternative mapping tool, GMAP [21], and used to confirm and classify the observed discrepancies in gene content between the two assemblies....
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