Acinetobacter nectaris sp. nov. and Acinetobacter boissieri sp. nov., isolated from floral nectar of wild Mediterranean insect-pollinated plants
Citations
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218 citations
Cites background from "Acinetobacter nectaris sp. nov. and..."
...In the last decade, a small number of complete genome sequences and a large number of draft sequences of Acinetobacter spp. have become available (Barbe et al. 2004; Fournier et al. 2006; Antunes et al. 2013)....
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...…the species and its large pangenome have led to suggestions that A. baumannnii might have endured one wave of population expansion during the diversification of the species and another very recently after the introduction of antibiotics at the hospital (Diancourt et al. 2010; Antunes et al. 2013)....
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150 citations
Cites background from "Acinetobacter nectaris sp. nov. and..."
...…rpoB, gyrB, 16S-rRNA Krizova et al., 2014 A. boissieri Floral nectar Spain Phenotypic, G+C, fatty acids, 16S-rRNA, rpoB, DNA-DNA hybridization Álvarez-Pérez et al., 2013 A. bouvetii Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 A. brisouii Wetland (Peat) Korea…...
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...…Korea G+C, 16S-RNA, DNA-DNA hybridization Yoon et al., 2007 A. nectaris Floral nectar Spain Phenotypic, G+C, fatty acids, 16S-rRNA, rpoB, DNA-DNA hybridization Álvarez-Pérez et al., 2013 A. nosocomialis Sewage Denmark 16S-rRNA Geiger et al., 2009 Life environment surface Korea 16S-rRNA rpoB Choi…...
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...Besides, Acinetobacter boissieri and Acinetobacter nectaris were two novel species that were isolated from nectar samples of plants in Spain (Álvarez-Pérez et al., 2013)....
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...Acinetobacter species Origin of isolation Country of isolation Identification method References A. albensis Water, soil Czech Republic Phenotypic, 16S-RNA, gyrB, rpoB, gltA, pyrG, recA, Maldi-TOF Krizova et al., 2015a A. anitratus Animal France Phenotypic, 16S-rRNA La Scola et al., 2001 A. antiviralis Plant roots Korea % G+C, fatty acid analysis, 16S-RNA, DNA-DNA hybridization Lee et al., 2009 A. apis Animal Korea DNA-DNA hybridization, 16S rRNA gene and rpoB sequence analysis, % G+C, and fatty acid analysis Kim et al., 2014 A. baylyi Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 A. beijerinckii Animal Lebanon rpoB Rafei et al., 2015 A. bereziniae Sewage Denmark 16S-rRNA Geiger et al., 2009 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Vegetables Hong Kong UK ARDRA Berlau et al., 1999a; Houang et al., 2001 Meat Lebanon rpoB Rafei et al., 2015 Human skin Germany Hong Kong Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD Seifert et al., 1997; Chu et al., 1999 Animal Lebanon rpoB Rafei et al., 2015 A. bohemicus Soil Czech Republic rpoB, gyrB, 16S-rRNA Krizova et al., 2014 Water Czech Republic rpoB, gyrB, 16S-rRNA Krizova et al., 2014 A. boissieri Floral nectar Spain Phenotypic, G+C, fatty acids, 16S-rRNA, rpoB, DNA-DNA hybridization Álvarez-Pérez et al., 2013 A. bouvetii Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 A. brisouii Wetland (Peat) Korea Phenotypic, G+C, fatty acids, 16S-rRNA, DNA-DNA hybridization Anandham et al., 2010 A. calcoaceticus Sewage, water Denmark, Croitia 16S-rRNA Geiger et al., 2009; Maravić et al., 2015 Soil Hong Kong Korea Lebanon China ARDRA 16S-rRNA rpoB Houang et al., 2001; Choi et al., 2012; Rafei et al., 2015; Wang and Sun, 2015 Vegetables Lebanon UK rpoB ARDRA Berlau et al., 1999a; Rafei et al., 2015; Al Atrouni et al., 2016 Animal Lebanon rpoB Rafei et al., 2015 Human skin Hong Kong India Phenotypic, ARDRA, RAPD Chu et al., 1999; Patil and Chopade, 2001 A. gandensis Water Croitia – Maravić et al., 2015 Animal – Phenotypic, DNA-DNA hybridization, 16S rRNA rpoB, % G+C, fatty acid, MALDI-TOF MS Smet et al., 2014 A. gerneri Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 Animal Lebanon rpoB Rafei et al., 2015 (Continued) Frontiers in Microbiology | www.frontiersin.org 3 February 2016 | Volume 7 | Article 49 TABLE 1 | Continued Acinetobacter species Origin of isolation Country of isolation Identification method References A. grimontii, Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 A. guangdongensis lead-zinc ore mine site China Phenotypic, G+C, fatty acids, 16S-rRNA, gyrB, rpoB, DNA-DNA hybridization Feng et al., 2014b A. guillouiae Water Denmark 16S-rRNA Geiger et al., 2009 Vegetables UK ARDRA Berlau et al., 1999a Human skin Hong Kong UK, Netherland Phenotypic, ARDRA, RAPD, AFLP Chu et al., 1999; Dijkshoorn et al., 2005 A. haemolyticus Water Croitia – Maravić et al., 2015 Human skin India Phenotypic Patil and Chopade, 2001 A. harbinensis Water China Phenotypic, G+C, fatty acids, 16S-rRNA, gyrB, rpoB, DNA-DNA hybridization Li et al., 2014b A. indicus Dump site India Phenotypic, G+C, fatty acids, 16S-rRNA, rpoB, DNA-DNA hybridization Malhotra et al., 2012 A. johnsonii Activated sludge Germany Pcr fingerprinting Wiedmann-al-Ahmad et al., 1994 Sewage, water, sea food Denmark, Croitia, China 16S-rRNA Geiger et al., 2009; Zong and Zhang, 2013; Maravić et al., 2015 Animal Lebanon rpoB Rafei et al., 2015 Human skin Germany Hong Kong UK, Netherland Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD, AFLP Seifert et al., 1997; Chu et al., 1999; Dijkshoorn et al., 2005 A. junii Activated sludge Germany Pcr fingerprinting Wiedmann-al-Ahmad et al., 1994 Sewage, water Denmark, Croitia 16S-rRNA Geiger et al., 2009; Maravić et al., 2015 Animal Lebanon rpoB Rafei et al., 2015 Soil China ARDRA 16S-rRNA rpoB Wang and Sun, 2015 Human skin Germany Hong Kong India UK, Netherland Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD, AFLP Seifert et al., 1997; Chu et al., 1999; Patil and Chopade, 2001; Dijkshoorn et al., 2005 A. koukii Soil, beet field, sediment Korea, Germany, Netherland, Malaysia, Thailand Phenotypic, G+C, fatty acids, 16S-rRNA, gyrB, rpoB, DNA-DNA hybridization Choi et al., 2013 A. kyonggiensis Sewage Korea Phenotypic, G+C, fatty acids, 16S-rRNA, DNA-DNA hybridization Lee and Lee, 2010 A. lwoffii Activated sludge Germany PCR fingerprinting Wiedmann-al-Ahmad et al., 1994 Sewage, water, sea food Denmark 16S-rRNA Geiger et al., 2009 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Animal Lebanon, Croitia rpoB, 16S-RNA Rafei et al., 2015; Sun et al., 2015 Vegetables UK ARDRA Berlau et al., 1999a Human skin Germany UK Hong Kong India Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD Seifert et al., 1997; Berlau et al., 1999b; Chu et al., 1999; Patil and Chopade, 2001 (Continued) Frontiers in Microbiology | www.frontiersin.org 4 February 2016 | Volume 7 | Article 49 TABLE 1 | Continued Acinetobacter species Origin of isolation Country of isolation Identification method References A. marinus Water Korea G+C, 16S-RNA, DNA-DNA hybridization Yoon et al., 2007 A. nectaris Floral nectar Spain Phenotypic, G+C, fatty acids, 16S-rRNA, rpoB, DNA-DNA hybridization Álvarez-Pérez et al., 2013 A. nosocomialis Sewage Denmark 16S-rRNA Geiger et al., 2009 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Vegetables UK ARDRA Berlau et al., 1999a Human skin Hong Kong ARDRA, RAPD Chu et al., 1999 A. oleivorans Rice paddy Korea % G+C, fatty acid analysis, 16S-RNA, DNA-DNA hybridization Kang et al., 2011 A. pakistanensis Wastewater Pakistan Phenotypic, fatty acids, 16S-rRNA, gyrB, rpoB, atpD, DNA-DNA hybridization Abbas et al., 2014 A. parvus Soil Korea 16S-rRNA rpoB Choi et al., 2012 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 A. pittii Sewage Denmark 16S-rRNA Geiger et al., 2009 Soil Hong Kong, Lebanon ARDRA rpoB Houang et al., 2001; Rafei et al., 2015 Vegetables Hong Kong Lebanon UK ARDRA rpoB Berlau et al., 1999a; Houang et al., 2001; Rafei et al., 2015 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Water Lebanon rpoB Rafei et al., 2015 Cheese, Meat Lebanon rpoB Rafei et al., 2015 Animal Lebanon rpoB Rafei et al., 2015 Human skin Germany Hong Kong India Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD Seifert et al., 1997; Chu et al., 1999; Patil and Chopade, 2001 A. populi Populus bark China Phenotypic,16S-RNA, gyrB, rpoB, DNA-DNA hybridization Li et al., 2015b A. puyangensis Populus bark China Phenotypic, G+C, fatty acids, 16S-rRNA, gyrB, rpoB, DNA-DNA hybridization Li et al., 2013 A. qingfengensis Populus bark China Phenotypic, G+C, fatty acids, 16S-rRNA, gyrB, rpoB, DNA-DNA hybridization Li et al., 2014a A. radioresistens Soil, cotton, water Australia, Croitia Dortet et al., 2006; Maravić et al., 2015 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Animal Lebanon rpoB Rafei et al., 2015; Sunantaraporn et al., 2015 Human skin Germany UK Hong Kong Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD Seifert et al., 1997; Berlau et al., 1999b; Chu et al., 1999 (Continued) Frontiers in Microbiology | www.frontiersin.org 5 February 2016 | Volume 7 | Article 49 TABLE 1 | Continued Acinetobacter species Origin of isolation Country of isolation Identification method References A. refrigeratoris Life environment surface China 16S-rRNA, rpoB DNA-DNA hybridization Feng et al., 2014a A. rudis Wastewter, raw milk Portugal, Israel Phenotypic, G+C, fatty acids, 16S-rRNA, gyrB, rpoB, DNA-DNA hybridization Vaz-Moreira et al., 2011 A. seifertii/genomspecies close 13 TU Life environment surface Korea 16S-RNA, rpoB Choi et al., 2012 Human skin Hong Kong ARDRA, RAPD Chu et al., 1999 A. seohaensis Water Korea G+C, 16S-RNA, DNA-DNA hybridization Yoon et al., 2007 A. shindleri Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Animal Lebanon rpoB Rafei et al., 2015; Sunantaraporn et al., 2015 A. soli Soil Korea Phenotypic, fatty acids, G+C content, 16S-rRNA gyrB, DNA-DNA hybridization Kim et al., 2008 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 Vegetables Lebanon rpoB Rafei et al., 2015 A. tandoii Activated sludge plant Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 Soil Korea 16S-rRNA rpoB Choi et al., 2012 Life environment surface Korea 16S-rRNA rpoB Choi et al., 2012 A. tjernbergiae Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 A. towneri Activated sludge Australia 16S-rRNA DNA-DNA hybridization Carr et al., 2003 A. variabilis /(genomspecies 15TU) Sewage, water, sea food Denmark 16S-rRNA Geiger et al., 2009 Life environment surface Korea rpoB Choi et al., 2012 Human skin Hong Kong ARDRA, RAPD Chu et al., 1999 Animal France Phenotypic, gyrA, gyrB, rpoB Poirel et al., 2012 Animal – Phenotypic, rpoB, gyrB, Maldi-Tof, whole genome analysis Nishimura et al., 1988 A. venetianus Water Oil vegetables Israel, Italy, Denmark, Hong Kong, japan Phenotypic, DNA-DNA hybridization, AFLP, rpoB, ARDRA, tDNA PCR Vaneechoutte et al., 2009 Acinetobacter spp. Water China Malaysia, Thailand Vietnam 16S-rRNA Fuhs and Chen, 1975; Huys et al., 2007; Krizova et al., 2015b; Xiong et al., 2015 Soil France-Kuwait 16S-rRNA Bordenave et al., 2007; Obuekwe et al., 2009 Meat Hong Kong ARDRA Houang et al., 2001 (Continued) Frontiers in Microbiology | www.frontiersin.org 6 February 2016 | Volume 7 | Article 49 TABLE 1 | Continued Acinetobacter species Origin of isolation Country of isolation Identification method References Fish, shrimps Hong Kong ARDRA Houang et al., 2001; Huys et al., 2007 Sediment China Malaysia, Thailand Vietnam 16S-rRNA Huys et al., 2007; Xiong et al., 2015 Plants nectar Israel, Spain Pyrosequencing, 16S-rRNA Fridman et al., 2012; Álvarez-Pérez and Herrera, 2013 Milk United states Kenya Korea Phenotypic Jayarao and Wang, 1999; Ndegwa et al., 2001; Nam et al., 2009; Gurung et al., 2013 Animal Angola 16S-rRNA Guardabassi et al., 1999 Human skin Germany Hong Kong India UK, Netherland Phenotypic, ARDRA, SDS-PAGE, ribotyping, DNA-DNA hybridization, RAPD, AFLP Seifert et al., 1997; Chu et al., 1999; Patil and Chopade, 2001; Dijkshoorn et al., 2005 genomspecies 14 BJ Sewage Denmark 16S-rRNA Geiger et al., 2009 Human skin Hong Kong ARDRA, RAPD Chu et al., 1999 A. genospecies 15 BJ Human skin UK Hong Kong Phenotypic, ADRA, RAPD Berlau et al., 1999b; Chu et al., 1999 genomspecies 16 Sewage Denmark 16S-rRNA Geiger et al., 2009 Vegetables Hong Kong ARDRA Houang et al., 2001 Human skin Hong Kong ARDRA, RAPD Chu et al., 1999 A. genospecies 17 Human skin Hong Kong ARDRA, RAPD Chu et al., 1999 A. genospecies 13 BJ, 14 TU Human skin Hong Kong ARDRA, RAPD Chu et al., 1999...
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143 citations
99 citations
References
155 citations
Additional excerpts
...These values are slightly lower than those commonly found for strains of other species of the genus Acinetobacter (Bouvet & Grimont, 1986; Nishimura et al., 1988; Nemec et al., 2003; Vaneechoutte et al., 2009; Kang et al., 2011)....
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151 citations
"Acinetobacter nectaris sp. nov. and..." refers methods in this paper
...These strains were isolated on different dates from nectar samples of several plant species collected at different places within the surroundings of Doñana’s Natural Park (Huelva province, southwest Spain), using the procedure described by Álvarez-Pérez et al. (2012)....
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...An almost complete fragment of the 16S rRNA gene was amplified and subsequently sequenced as described by Álvarez-Pérez et al. (2012)....
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151 citations
"Acinetobacter nectaris sp. nov. and..." refers methods in this paper
...…obtained by PM fingerprinting with more conventional assimilation tests commonly used for classification of members of the genus Acinetobacter, some key biochemical features were also assessed using the phenotypic system described by Bouvet & Grimont (1986) and adapted by Nemec et al. (2009)....
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143 citations
"Acinetobacter nectaris sp. nov. and..." refers methods in this paper
...High-molecularmass total genomic DNA was extracted by the method of Wilson (1987)....
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133 citations
"Acinetobacter nectaris sp. nov. and..." refers background in this paper
...While foraging on flowers, pollinators can contaminate floral nectar with different prokaryotic and eukaryotic microorganisms, some of which are particularly well-adapted to thrive in this ephemeral habitat characterized by high osmotic pressure and the presence of plant secondary metabolites with defensive functions (Herrera et al., 2010; Pozo et al., 2012)....
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...…nectar with different prokaryotic and eukaryotic microorganisms, some of which are particularly well-adapted to thrive in this ephemeral habitat characterized by high osmotic pressure and the presence of plant secondary metabolites with defensive functions (Herrera et al., 2010; Pozo et al., 2012)....
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