Journal ArticleDOI
African lungfish genome sheds light on the vertebrate water-to-land transition.
Kun Wang,Jun Wang,Chenglong Zhu,Liandong Yang,Yandong Ren,Yandong Ren,Jue Ruan,Guangyi Fan,Jiang Hu,Wenjie Xu,X. J. Bi,Y. H. Zhu,Yue Song,Huatao Chen,Tiantian Ma,Ruoping Zhao,Haifeng Jiang,Bin Zhang,Chenguang Feng,Yuan Yuan,Xiaoni Gan,Yongxin Li,H.R. Zeng,Qun Liu,Yaolei Zhang,Feng Shao,Shijie Hao,He Zhang,Xun Xu,Xin Liu,De-Peng Wang,Min Zhu,Guojie Zhang,Wenming Zhao,Qiang Qiu,Shunping He,Wen Wang,Wen Wang +37 more
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TLDR
In this paper, the authors reported a 40-Gb chromosome-level assembly of the African lungfish (Protopterus annectens) genome, which is the largest genome assembly ever reported and has a contig and chromosome N50 of 1.60 mb and 2.81 Gb, respectively.About:
This article is published in Cell.The article was published on 2021-03-04. It has received 77 citations till now. The article focuses on the topics: African lungfish & Lungfish.read more
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The Chinese pine genome and methylome unveil key features of conifer evolution
TL;DR: Wang et al. as mentioned in this paper presented a 25.4-Gb chromosome-level assembly of Chinese pine (Pinus tabuliformis) and revealed that its genome size is mostly attributable to huge intergenic regions and long introns with high transposable element (TE) content.
Journal ArticleDOI
Genome evolution and diversity of wild and cultivated potatoes
Die Tang,Yuxin Jia,Jinzhe Zhang,Hongbo Li,Lin Cheng,Pei Wang,Zhigui Bao,Zhihong Liu,Shuangshuang Feng,Xijian Zhu,Dawei Li,Guangtao Zhu,Hongru Wang,Yao Zhou,Yongfeng Zhou,Glenn J. Bryan,C. Robin Buell,Chunzhi Zhang,Sanwen Huang +18 more
TL;DR: In this article , the authors examined the genome evolution and diversity of wild and cultivated landrace potatoes and found that the potato genome substantially expanded its repertoire of disease-resistance genes when compared with closely related seed-propagated solanaceous crops.
Journal ArticleDOI
Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes.
X. J. Bi,Kun Wang,Liandong Yang,Hailin Pan,Haifeng Jiang,Qiwei Wei,Miaoquan Fang,Hao Yu,Chenglong Zhu,Yiran Cai,Yuming He,Xiaoni Gan,H.R. Zeng,Daqi Yu,Y. H. Zhu,Y. H. Zhu,Huifeng Jiang,Qiang Qiu,Huanming Yang,Yong Zhang,Wen Wang,Wen Wang,Wen Wang,Min Zhu,Min Zhu,Shunping He,Guojie Zhang +26 more
TL;DR: In this paper, the authors present genome sequences of the bichir, paddlefish, bowfin, and alligator gar, covering all major early divergent lineages of ray-finned fishes.
Rethinking fish biology and biotechnologies in the challenge era for burgeoning genome resources and strengthening food security
Jian-Fang Gui,Li Zhou,Xi-Yin Li +2 more
TL;DR: In this article, the authors present a blueprint for genetic improvement and new breed creation for aquaculture species and analyze the potential of these new breeding strategies for improving aquaulture seed industry and strengthening food security.
Journal ArticleDOI
Rethinking fish biology and biotechnologies in the challenge era for burgeoning genome resources and strengthening food security
TL;DR: In this article , the authors present a blueprint for genetic improvement and new breed creation for aquaculture species and analyze the potential of these new breeding strategies for improving aquaulture seed industry and strengthening food security.
References
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li,Richard Durbin +1 more
TL;DR: Burrows-Wheeler Alignment tool (BWA) is implemented, a new read alignment package that is based on backward search with Burrows–Wheeler Transform (BWT), to efficiently align short sequencing reads against a large reference sequence such as the human genome, allowing mismatches and gaps.
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ggplot2: Elegant Graphics for Data Analysis
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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TL;DR: This version of MAFFT has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update.
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