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Avicennia Genetic Diversity and Fine-Scaled Structure Influenced by Coastal Proximity of Mangrove Fragments

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TLDR
In this paper, the fine-scale spatial genetic structure (FSGS) of Avicennia populations and examined whether their position relative to the seaside or the size of mangrove patches could have influenced the extant local population genetic structure.
Abstract
Avicennia dominated mangrove forests occur from seaward to landward sites and hence are subject to different dynamics within estuarine ecosystems. Regeneration of mangrove forests primarily depends on the extent of propagule spread and subsequent establishment in suitable habitats. The complex nature of estuarine systems induces a wide variety of local conditions for within-site propagule retention and settlement thereby allowing spontaneous regeneration of mangroves. In this study, we estimated the fine-scale spatial genetic structure (FSGS) of Avicennia populations and examined whether their position relative to the seaside or the size of mangrove patches could have influenced the extant local population genetic structure. A kinship-based FSGS was performed using microsatellite markers in 523 A. marina, 189 A. rumphiana and 60 A. alba adult trees of 24 sites in The Philippines. Transects within each estuary were taken both parallel and perpendicular to the coastline or tidal river edge. The extent of local mangrove areas and various human-induced encroachments as such did not show any trend in allele diversity, heterozygosity values or inbreeding levels. However, farther inland situated mangrove patches showed a larger FSGS extent across the neighborhood (up to 75 m) though less diversity along with inbreeding, most likely due to retention of related propagules and lowered chance of external propagule input. Estimation of connectivity along a same coastline stretch supported a unidirectional steppingstone or adjacent migration model for populations of either A. marina, A. alba or A. rumphiana. These were congruent with ocean currents across mangrove estuaries of the Tablas Strait and along Western Leyte, thereby emphasizing the relevance of coastal connectivity for long term persistence. From this study, we conclude that both proximity to open water and narrowness of mangrove patches may affect their captured diversity, inbreeding and fine-scale structure caused by propagule movement within or beyond a local mangrove fragment during recent generations. Higher levels of allele diversity for seaward sites and highest likelihood of migration for adjacent mangroves both add to the importance of coastal connectivity that is the only natural cohesive force on longer term and necessary to counteract short term effects of increasingly encroached mangrove environments.

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Journal ArticleDOI

Barrier to Gene Flow of Grey Mangrove Avicennia marina Populations in the Malay Peninsula as Revealed From Nuclear Microsatellites and Chloroplast Haplotypes

TL;DR: In this article, the authors assessed the genetic diversity and structure of Avicennia marina populations in Malay Peninsula using nuclear microsatellite markers and chloroplast sequences, and three evolutionary significant units were obtained with nuclear and cytoplasmic markers.
Journal ArticleDOI

Complete Chloroplast Genome Variants Reveal Discrete Long-Distance Dispersal Routes of Rhizophora in the Western Indian Ocean

TL;DR: In this paper, the authors examined the phylogeography of 21 R. mucronata species across a >4,200 km coastal stretch in the Western Indian Ocean (WIO) using R. stylosa as outgroup.
Journal ArticleDOI

Genotypes of Rhizophora Propagules From a Non-mangrove Beach Provide Evidence of Recent Long-Distance Dispersal

TL;DR: In this paper, the authors used microsatellite markers to identify drift propagules as R. racemosa and found that drift propagule showed higher levels of genetic diversity and private alleles giving a higher relatedness to each other than to any putative source population.
Journal ArticleDOI

Assessing the Carbon Storage Potential of a Young Mangrove Plantation in Myanmar

TL;DR: In this paper , the carbon storage potential of the planted mangrove plantations in the Ayeyarwady Region, Myanmar was investigated, and the overall average above-and belowground carbon storage was 100.34 ± 50.85 MgCO2-eq ha−1.
Journal ArticleDOI

Extremely Stochastic Connectivity of Island Mangroves

TL;DR: In this article , the authors investigated the spatiotemporal scale of propagule dispersal of Rhizophora stylosa, one of the widely distributed mangrove species in the Indo-West Pacific.
References
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Journal ArticleDOI

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TL;DR: It is found that in most cases the estimated ‘log probability of data’ does not provide a correct estimation of the number of clusters, K, and using an ad hoc statistic ΔK based on the rate of change in the log probability between successive K values, structure accurately detects the uppermost hierarchical level of structure for the scenarios the authors tested.
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genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

TL;DR: Genalex is a user-friendly cross-platform package that runs within Microsoft Excel, enabling population genetic analyses of codominant, haploid and binary data.
Journal ArticleDOI

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

TL;DR: STRUCTURE HARVESTER is presented, a web-based program for collating results generated by the program STRUCTURE, which provides a fast way to assess and visualize likelihood values across multiple values of K and hundreds of iterations for easier detection of the number of genetic groups that best fit the data.
Journal ArticleDOI

Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data

TL;DR: MICRO - CHECKER estimates the frequency of null alleles and, importantly, can adjust the allele and genotype frequencies of the amplified alleles, permitting their use in further population genetic analysis.
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