BLAST+: architecture and applications.
Citations
10,432 citations
7,747 citations
7,022 citations
Cites methods from "BLAST+: architecture and applicatio..."
...SWISS-MODEL performs this task by using two database search methods: BLAST (35,36), which is fast and sufficiently accurate for closely related templates, and HHblits (37), which adds sensitivity in case of remote homology....
[...]
...Each leaf of the tree corresponds to a template and target-template alignment (based on HHblits, BLAST or both); templates are labelled with their SMTL ID; bars indicate sequence identity and coverage to the target (darker shades of blue indicate higher sequence identity)....
[...]
5,173 citations
4,722 citations
Cites methods from "BLAST+: architecture and applicatio..."
...Hence, we replaced the programs BLAST and ClustalW2 by their latest revisions (BLAST+ (17) and Clustal Omega (18), respectively) to gain in scalability, accuracy and performance....
[...]
References
88,255 citations
"BLAST+: architecture and applicatio..." refers methods in this paper
...Background Basic Local Alignment Search Tool (BLAST) [1,2] is a sequence similarity search program that can be used to quickly search a sequence database for matches to a query sequence....
[...]
70,111 citations
"BLAST+: architecture and applicatio..." refers methods in this paper
...Background Basic Local Alignment Search Tool (BLAST) [1,2] is a sequence similarity search program that can be used to quickly search a sequence database for matches to a query sequence....
[...]
8,326 citations
"BLAST+: architecture and applicatio..." refers background or methods in this paper
...BLAT [13] uses an index stored in memory....
[...]
...Kent [13] mentions cases where BLAT users might find repeat masking of the database useful....
[...]
6,643 citations
4,628 citations