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Capture of Mouse and Human Stem Cells with Features of Formative Pluripotency.

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TLDR
Stem cells derived from formative mouse epiblast show distinct transcription factor dependencies, relying critically on Otx2, and cell culture conditions applied to human naive cells or embryos support expansion of similar stem cells, consistent with a conserved staging post on the trajectory of mammalian pluripotency.
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This article is published in Cell Stem Cell.The article was published on 2021-03-04 and is currently open access. It has received 112 citations till now. The article focuses on the topics: Induced pluripotent stem cell & Stem cell.

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Klf4 reverts developmentally programmed restriction of ground state pluripotency

TL;DR: Mouse embryonic stem cells derived from pluripotent early epiblast contribute functionally differentiated progeny to all foetal lineages of chimaeras and were maintained after Cre-mediated deletion of the Klf4 transgene, formally demonstrating complete and stable reprogramming of developmental phenotype.
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Mammalian in vitro gametogenesis.

TL;DR: Germ cells differentiate into sexually dimorphic gametes, oocytes, and spermatozoa, which unite to form new individuals as discussed by the authors, and therefore, germ cell development entails intricate regulations of genome f...
References
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Journal ArticleDOI

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

TL;DR: This work presents DESeq2, a method for differential analysis of count data, using shrinkage estimation for dispersions and fold changes to improve stability and interpretability of estimates, which enables a more quantitative analysis focused on the strength rather than the mere presence of differential expression.
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Fast gapped-read alignment with Bowtie 2

TL;DR: Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

TL;DR: By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.
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STAR: ultrafast universal RNA-seq aligner

TL;DR: The Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure outperforms other aligners by a factor of >50 in mapping speed.
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Model-based Analysis of ChIP-Seq (MACS)

TL;DR: This work presents Model-based Analysis of ChIP-Seq data, MACS, which analyzes data generated by short read sequencers such as Solexa's Genome Analyzer, and uses a dynamic Poisson distribution to effectively capture local biases in the genome, allowing for more robust predictions.
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Can you summarize the following paper: Induction of Pluripotency in Mouse Somatic Cells with Lineage Specifier?

The paper investigates the induction of pluripotency in mouse somatic cells using lineage specifier cues.