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Journal ArticleDOI

Characterization of Cell Membrane Permeability In Vitro Part I: Transport Behavior Induced by Single-Pulse Electric Fields*:

01 Jan 2018-Technology in Cancer Research & Treatment (SAGE Publications)-Vol. 17, pp 1533033818792491-1533033818792491
TL;DR: The results provide evidence that cells, especially those that uptake propidium more slowly, can achieve large permeabilities with a single electrical pulse that may be quantitatively measured using standard fluorescence microscopy equipment and techniques.
Abstract: Most experimental studies of electroporation focus on permeabilization of the outer cell membrane Some experiments address delivery of ions and molecules into cells that should survive; others foc
Citations
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Journal ArticleDOI
TL;DR: It is shown that after electroporation using electric pulse parameters that induce LirEP, some cells can be rescued by supplementing medium with compounds obtained from irreversibly electroporated cells, and it is determined that the intracellular molecules that contribute to the increase of cell viability are larger than 30 kDa.

20 citations

Journal ArticleDOI
TL;DR: A kinetic model for the perforation of microalgae cells of the species Chlorella vulgaris was developed and is the first contribution showing the applicability of kinetic modeling and numerical simulation for designing PEF processes for the purpose of biorefiningmicroalgae biomass.
Abstract: Pulsed Electric Fields (PEF) is a promising technology for the gentle and energy efficient disruption of microalgae cells such as Chlorella vulgaris. The technology is based on the exposure of cells to a high voltage electric field, which causes the permeabilization of the cell membrane. Due to the dependency of the effective treatment conditions on the specific design of the treatment chamber, it is difficult to compare data obtained in different chambers or at different scales, e.g., lab or pilot scale. This problem can be overcome by the help of numerical simulation since it enables the accessibility to the local treatment conditions (electric field strength, temperature, flow field) inside a treatment chamber. To date, no kinetic models for the cell membrane permeabilization of microalgae are available what makes it difficult to decide if and in what extent local treatment conditions have an impact on the permeabilization. Therefore, a kinetic model for the perforation of microalgae cells of the species Chlorella vulgaris was developed in the present work. The model describes the fraction of perforated cells as a function of the electric field strength, the temperature and the treatment time by using data which were obtained in a milliliter scale batchwise treatment chamber. Thereafter, the model was implemented in a CFD simulation of a pilot-scale continuous treatment chamber with colinear electrode arrangement. The numerical results were compared to experimental measurements of cell permeabilization in a similar continuous treatment chamber. The predicted values and the experimental data agree reasonably well what demonstrates the validity of the proposed model. Therefore, it can be applied to any possible treatment chamber geometry and can be used as a tool for scaling cell permeabilization of microalgae by means of PEF from lab to pilot scale. The present work provides the first contribution showing the applicability of kinetic modeling and numerical simulation for designing PEF processes for the purpose of biorefining microalgae biomass. This can help to develop new processes and to reduce the costs for the development of new treatment chamber designs.

9 citations

Journal ArticleDOI
Yan Mi1, Jin Xu1, Quan Liu1, Wu Xiao1, Qian Zhang, Junying Tang 
TL;DR: In this paper, a mathematical model of electroporation considering the effect of IRE is proposed for the first time, where a typical two-dimensional cell system is discretized into nodes using MATLAB, and a mesh transport network method (MTNM) model is established for simulation.

7 citations

Journal ArticleDOI
TL;DR: This paper critically examines the existing mechanistic, single-cell models which allow spatially and temporally resolved numerical simulations of electroporation-induced transmembrane transport of small molecules and shows that none of the tested models can be universally applied to the full range of experimental measurements.

6 citations

Journal ArticleDOI
Lea Rems1
TL;DR: In this article , the authors examine the existing mechanistic, single-cell models which allow spatially and temporally resolved numerical simulations of electroporation-induced transmembrane transport of small molecules by confronting them with different experimental measurements.

6 citations

References
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Journal ArticleDOI
TL;DR: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis that facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system.
Abstract: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.

43,540 citations


"Characterization of Cell Membrane P..." refers methods in this paper

  • ...51d).(29) Batch image processing was performed on each stack of images at each time point and each position with the chamber using CellProfiler (v2....

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Journal ArticleDOI
TL;DR: Gmsh as mentioned in this paper is an open-source 3D finite element grid generator with a build-in CAD engine and post-processor that provides a fast, light and user-friendly meshing tool with parametric input and advanced visualization capabilities.
Abstract: Gmsh is an open-source 3-D finite element grid generator with a build-in CAD engine and post-processor. Its design goal is to provide a fast, light and user-friendly meshing tool with parametric input and advanced visualization capabilities. This paper presents the overall philosophy, the main design choices and some of the original algorithms implemented in Gmsh. Copyright (C) 2009 John Wiley & Sons, Ltd.

5,322 citations

Journal ArticleDOI
TL;DR: An overview of 3D Slicer is presented as a platform for prototyping, development and evaluation of image analysis tools for clinical research applications and the utility of the platform in the scope of QIN is illustrated.

4,786 citations

Journal ArticleDOI
TL;DR: The first free, open-source system designed for flexible, high-throughput cell image analysis, CellProfiler is described, which can address a variety of biological questions quantitatively.
Abstract: Biologists can now prepare and image thousands of samples per day using automation, enabling chemical screens and functional genomics (for example, using RNA interference). Here we describe the first free, open-source system designed for flexible, high-throughput cell image analysis, CellProfiler. CellProfiler can address a variety of biological questions quantitatively, including standard assays (for example, cell count, size, per-cell protein levels) and complex morphological assays (for example, cell/organelle shape or subcellular patterns of DNA or protein staining).

4,578 citations


"Characterization of Cell Membrane P..." refers methods in this paper

  • ...0).(30) First, edge detection was performed on the blue channel (NucBlue channel) of each image set using a Sobel filter, and the nuclei in the resulting images were identified and characterized, including its circularity and area....

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Book
24 Feb 2012
TL;DR: This book is a tutorial written by researchers and developers behind the FEniCS Project and explores an advanced, expressive approach to the development of mathematical software.
Abstract: This book is a tutorial written by researchers and developers behind the FEniCS Project and explores an advanced, expressive approach to the development of mathematical software. The presentation spans mathematical background, software design and the use of FEniCS in applications. Theoretical aspects are complemented with computer code which is available as free/open source software. The book begins with a special introductory tutorial for beginners. Followingare chapters in Part I addressing fundamental aspects of the approach to automating the creation of finite element solvers. Chapters in Part II address the design and implementation of the FEnicS software. Chapters in Part III present the application of FEniCS to a wide range of applications, including fluid flow, solid mechanics, electromagnetics and geophysics.

2,372 citations


"Characterization of Cell Membrane P..." refers background in this paper

  • ...0).(26) Dirichlet boundary conditions were prescribed for the cylindrical regions at either end of the chamber that represent the electrode surfaces inserted into the chamber and set to the steady state voltage obtained from the 10-, 100-, and 1000-microsecond pulses (Supplemental Figure 1)....

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