Clathrin senses membrane curvature
TL;DR: It is shown that clathrin is a strong sensor of membrane curvature, comparable to previously studied adaptor proteins, and that protein networks, rather than individual protein domains, are likely the critical drivers of membranes curvature sensing.
Abstract: The ability of proteins to sense membrane curvature is essential to diverse membrane remodeling processes including clathrin-mediated endocytosis. Multiple adaptor proteins within the clathrin pathway have been shown to assemble together at curved membrane sites, leading to local recruitment of the clathrin coat. Because clathrin does not bind to the membrane directly, it has remained unclear whether clathrin plays an active role in sensing curvature or is passively recruited by its adaptor proteins. Using a synthetic tag to assemble clathrin directly on membrane surfaces, here we show that clathrin is a strong sensor of membrane curvature, comparable to previously studied adaptor proteins. Interestingly, this sensitivity arises from clathrin assembly, rather than from the properties of unassembled triskelia, suggesting that triskelia have preferred angles of interaction, as predicted by earlier structural data. Further, when clathrin is recruited by adaptors, its curvature sensitivity is amplified by two to ten-fold, such that the resulting protein complex is up to 100 times more likely to assemble on a highly curved surface, compared to a flatter one. This exquisite sensitivity points to a synergistic relationship between the coat and its adaptor proteins, which enables clathrin to pinpoint sites of high membrane curvature, an essential step in ensuring robust membrane traffic. More broadly, these findings suggest that protein networks, rather than individual protein domains, are likely the critical drivers of membrane curvature sensing.
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TL;DR: The authors do a superb job of selecting the material for each chapter and explaining the material with equations and narrative in an easily digestible manner, and this textbook is an excellent resource for a research scientist and for a teacher.
Abstract: Physical Biology of the Cell, 2nd Edition, is a textbook that focuses on the application of physical principles to understanding biological systems. The subject matter of the text is organized according to common physical principles that govern biological processes rather than in relation to the biological processes themselves, as is common for most biology and cell biology textbooks. Topics covered in the book span a broad range of interests, including electrostatics, molecular interactions, molecular motors and the cytoskeleton, and membranes. Each chapter features color figures, derived equations with relevant examples, and problem sets at the chapter’s conclusion. The problem sets at the end of the chapters are expanded from the first edition. Further, the second edition includes two new chapters, one on light and pattern formation, and another on the use of computation in exploring biological problems. Additional student and instructor resources are also available online.
The primary audience for the textbook could include advanced undergraduate students or first-year graduate students. While the textbook may be best suited for a biophysics course, it could also be used as a primary or supplementary text for teaching cellular and molecular biology. As a teaching tool for cellular and molecular biology, the many examples featured throughout the text could easily be employed to assist students in learning the principles of how a cellular or molecular system functions. A basic level of mathematical proficiency would be required of the student. While this textbook could be an excellent resource for many courses, there are several topics commonly covered in biochemistry classes, such the glycolytic pathway, that are featured in the book but in different contexts than many widely used biochemistry texts. For a biophysics course that is heavily focused on techniques, individual references that discuss the specific techniques in detail would be more suitable than this book. Of course, any instructor seeking to use this textbook should be aware of its content before making a selection.
This textbook is an excellent resource, both for a research scientist and for a teacher. The authors do a superb job of selecting the material for each chapter and explaining the material with equations and narrative in an easily digestible manner. Readers who enjoy this book may also enjoy Molecular Driving Forces by Dill and Bromberg, which gives excellent treatment of similar concepts.
491 citations
TL;DR: The fundamental mechanisms such as the hydrophobic insertion, scaffolding and crowding mechanisms these proteins use to produce membrane curvatures and complex shapes required to form intracellular organelles and vesicular structures involved in endocytosis and secretion are described.
15 citations
TL;DR: A comprehensive theoretical framework is developed that finds that for the case of increasing stiffness or preferred curvature, curvature will be acquired gradually with growth, while for increasing line tension, the lattice must have grown to a certain size before a flat-to-curved transition can occur.
Abstract: Clathrin-mediated endocytosis is the major pathway by which eukaryotic cells take up extracellular material, but it is still elusive which physical pathways are being taken during membrane invagination. From a continuum point of view, it can be driven by increases in coat stiffness, preferred curvature or line tension. Here we develop a comprehensive theoretical framework that can be solved analytically and that predicts the consequences of these different scenarios. We find that for the case of increasing stiffness or preferred curvature, curvature will be acquired gradually with growth, while for increasing line tension, the lattice must have grown to a certain size before a flat-to-curved transition can occur. At low membrane tension, the critical value for coat stiffness is 30 kBT, for preferred curvature it is 200 nm, and for line tension it is 6 pN. For high membrane tension, critical coat stiffness is 150 kBT and critical preferred curvature is 70 nm. In the mixed case when a coat with finite rigidity but increasing line tension is considered, a cup-to-sphere transition can occur for a line tension of 6 pN. The flat-to-curved and the cup-to-sphere transitions driven by line tension are both suppressed by high membrane tension.
14 citations
TL;DR: In this article , Zhao et al. quantified the nanoscale dynamics of clathrin-coat shape change during vesicle assembly and found that de novo accumulations generate both flat and curved structures.
Abstract: Clathrin polymerization and changes in plasma membrane architecture are necessary steps in forming vesicles to internalize cargo during clathrin-mediated endocytosis (CME). Simultaneous analysis of clathrin dynamics and membrane structure is challenging due to the limited axial resolution of fluorescence microscopes and the heterogeneity of CME. This has fueled conflicting models of vesicle assembly and obscured the roles of flat clathrin assemblies. Here, using Simultaneous Two-wavelength Axial Ratiometry (STAR) microscopy, we bridge this critical knowledge gap by quantifying the nanoscale dynamics of clathrin-coat shape change during vesicle assembly. We find that de novo clathrin accumulations generate both flat and curved structures. High-throughput analysis reveals that the initiation of vesicle curvature does not directly correlate with clathrin accumulation. We show clathrin accumulation is preferentially simultaneous with curvature formation at shorter-lived clathrin-coated vesicles (CCVs), but favors a flat-to-curved transition at longer-lived CCVs. The broad spectrum of curvature initiation dynamics revealed by STAR microscopy supports multiple productive mechanisms of vesicle formation and advocates for the flexible model of CME.
12 citations
TL;DR: In this article, the authors show that the membranes of fused vesicles undergo actomyosin-mediated folding and retention, which prevents them from incorporating into the apical surface.
12 citations
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TL;DR: This stately book is to show how the various types of animals have solved the fundamental problems of life, and how their struc-ture is to be interpreted in terms of their functions and environment.
Abstract: THE aim of this stately book is to show how the various types of animals have solved the fundamental problems of life, and how their struc-ture is to be interpreted in terms of their functions and environment. The keynote of the book is to keep the gratufate the author on the success of his for he has written a worthy successor to the once-famous, now forgotten “Anatomischphysiologische Uebersicht des Tierreiches,” by Bergmann and Leuckart. The outstanding merit of the achievement is in its unified or synthetic presentation of the facts—it is at once anatomical and physiological, cecological and evolutionist. This general biological outlook is very useful for the analytic student.
4,072 citations
TL;DR: ‘Endocytosis’ encompasses several diverse mechanisms by which cells internalize macromolecules and particles into transport vesicles derived from the plasma membrane and must be viewed in a broader context than simple vesicular trafficking.
Abstract: The plasma membrane is the interface between cells and their harsh environment. Uptake of nutrients and all communication among cells and between cells and their environment occurs through this interface. 'Endocytosis' encompasses several diverse mechanisms by which cells internalize macromolecules and particles into transport vesicles derived from the plasma membrane. It controls entry into the cell and has a crucial role in development, the immune response, neurotransmission, intercellular communication, signal transduction, and cellular and organismal homeostasis. As the complexity of molecular interactions governing endocytosis are revealed, it has become increasingly clear that it is tightly coordinated and coupled with overall cell physiology and thus, must be viewed in a broader context than simple vesicular trafficking.
3,709 citations
TL;DR: The discovery of ghrelin indicates that the release of GH from the pituitary might be regulated not only by hypothalamic GH-releasing hormone, but also by gh Relin derived from the stomach, which plays important roles for maintaining GH release and energy homeostasis in vertebrates.
Abstract: Small synthetic molecules called growth hormone secretagogues (GHSs) stimulate the release of growth hormone (GH) from the pituitary. They act through the GHS-R, a G protein-coupled receptor whose ligand has only been discovered recently. Using a reverse pharmacology paradigm with a stable cell line expressing GHS-R, we purified an endogenous ligand for GHS-R from rat stomach and named it "ghrelin," after a word root ("ghre") in Proto-Indo-European languages meaning "grow." Ghrelin is a peptide hormone in which the third amino acid, usually a serine but in some species a threonine, is modified by a fatty acid; this modification is essential for ghrelin's activity. The discovery of ghrelin indicates that the release of GH from the pituitary might be regulated not only by hypothalamic GH-releasing hormone, but also by ghrelin derived from the stomach. In addition, ghrelin stimulates appetite by acting on the hypothalamic arcuate nucleus, a region known to control food intake. Ghrelin is orexigenic; it is secreted from the stomach and circulates in the bloodstream under fasting conditions, indicating that it transmits a hunger signal from the periphery to the central nervous system. Taking into account all these activities, ghrelin plays important roles for maintaining GH release and energy homeostasis in vertebrates.
2,740 citations
TL;DR: Clathrin-mediated endocytosis is the endocytic portal into cells through which cargo is packaged into vesicles with the aid of a clathrin coat and is fundamental to neurotransmission, signal transduction and the regulation of many plasma membrane activities and is thus essential to higher eukaryotic life.
Abstract: Clathrin-mediated endocytosis is the endocytic portal into cells through which cargo is packaged into vesicles with the aid of a clathrin coat. It is fundamental to neurotransmission, signal transduction and the regulation of many plasma membrane activities and is thus essential to higher eukaryotic life. Morphological stages of vesicle formation are mirrored by progression through various protein modules (complexes). The process involves the formation of a putative FCH domain only (FCHO) initiation complex, which matures through adaptor protein 2 (AP2)-dependent cargo selection, and subsequent coat building, dynamin-mediated scission and finally auxilin- and heat shock cognate 70 (HSC70)-dependent uncoating. Some modules can be used in other pathways, and additions or substitutions confer cell specificity and adaptability.
1,974 citations
Additional excerpts
...All vesicles were composed of 76% DOPC, 15% DOPS, 5% PI-(4,5)-P2, 2% DP-EG10-Biotin, and 2% ATTO 465-DHPE (mol%)....
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...All vesicles were composed of 81% DOPC, 15% PI-(4,5)-P2, 2% DP-EG10-Biotin, and 2% ATTO 465-DHPE (mol%)....
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...composed of 81% DOPC, 15% PI-(4,5)-P2, 2% DP-EG10-Biotin, and 2% ATTO 465DHPE (mol%)....
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TL;DR: The structure of the Drosophila amphiphysin BAR domain is solved and it is predicted that BAR domains are in many protein families, including sorting nexins, centaurins, and oligophrenins.
Abstract: The BAR (Bin/amphiphysin/Rvs) domain is the most conserved feature in amphiphysins from yeast to human and is also found in endophilins and nadrins. We solved the structure of the Drosophila amphiphysin BAR domain. It is a crescent-shaped dimer that binds preferentially to highly curved negatively charged membranes. With its N-terminal amphipathic helix and BAR domain (N-BAR), amphiphysin can drive membrane curvature in vitro and in vivo. The structure is similar to that of arfaptin2, which we find also binds and tubulates membranes. From this, we predict that BAR domains are in many protein families, including sorting nexins, centaurins, and oligophrenins. The universal and minimal BAR domain is a dimerization, membrane-binding, and curvature-sensing module.
1,666 citations