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Conformations and hydration structure of hydrophobic polyelectrolyte atactic poly(ethacrylic acid) in dilute aqueous solution as a function of neutralisation

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TLDR
In this paper, the intermolecular structure and dynamics of polyethacrylic acid (PEA) in salt-free aqueous dilute solution at 25°C were studied via molecular dynamics simulations with explicit-solvent and explicit-ion description.
Abstract
Chain conformations, counter-ion structure, intermolecular hydrogen bonding structure and dynamics of atactic polyethacrylic acid (PEA) in salt-free aqueous dilute solution at 25°C are studied via molecular dynamics (MD) simulations with explicit-solvent and explicit-ion description for the first time The intermolecular structure was analysed by the radial distribution functions (RDF) for specific atom types between PEA chain, water molecules and Na+ counter-ions, as well as by the hydration near the PEA chain in the solvated system An increase in f provides an increase in 〈Rg〉 of the chain, consistent with the existence of the compact form of PEA The simulations show expansion for radius-of-gyration with increase in f, as expected for flexible polyelectrolytes under salt-free condition The extent of intermolecular hydrogen bonds (H-bonds) between PEA and water is enhanced by increase in f Chains having a higher counter-ion density show higher values of 〈Rg〉, influenced by intermolecular interactions

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Single chain properties of polyelectrolytes in poor solvent

TL;DR: In this paper, the behavior of a dilute solution of strongly charged polyelectrolytes in poor solvents is studied using molecular dynamics simulations, where counterions explicitly take into account.
Journal ArticleDOI

Theory of Polyelectrolyte Solutions

A. Hickling
- 01 Apr 1963 - 
TL;DR: Polyelectrolyte Solutions A Theoretical Introduction by Stuart A. Rice and Mitsuru Nagasawa as mentioned in this paper, with a contribution by Herbert Morawetz, was published in 1961.
Journal ArticleDOI

Adsorption of organic molecules on mineral surfaces studied by first-principle calculations: A review.

TL;DR: The aim of this contribution is to inspire scientists to benefit from first-principle calculations and to apply the similar strategies when studying and tailoring interfacial properties at the atomistic scale, especially for those interested in the design and development of new molecules and new products.
Journal ArticleDOI

The binding of calcium ion with different groups of superplasticizers studied by three DFT methods, B3LYP, M06-2X and M06

TL;DR: In this article, three different DFT methods, B3LYP, M06-2X and M06, with PCM (polarized continuum model) solvent environment were performed to study the binding of Ca2+ with different groups of superplasticizers.
Journal ArticleDOI

Molecular dynamics study of the effects of calcium ions on the conformational properties of comb-like poly(acrylic acid-co-methyl allyl polyoxyethylene ether)

TL;DR: In this article, all-atom molecular dynamics simulations were employed to study the microscopic conformational properties of three kinds of comb-like poly(acrylic acid-co-methyl allyl polyoxyethylene ether) (P(AA-co)-MAPEG)) in solution.
References
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Journal ArticleDOI

Molecular dynamics with coupling to an external bath.

TL;DR: In this paper, a method is described to realize coupling to an external bath with constant temperature or pressure with adjustable time constants for the coupling, which can be easily extendable to other variables and to gradients, and can be applied also to polyatomic molecules involving internal constraints.
Journal ArticleDOI

Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes

TL;DR: In this paper, a numerical algorithm integrating the 3N Cartesian equations of motion of a system of N points subject to holonomic constraints is formulated, and the relations of constraint remain perfectly fulfilled at each step of the trajectory despite the approximate character of numerical integration.
Journal ArticleDOI

GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

TL;DR: A new implementation of the molecular simulation toolkit GROMACS is presented which now both achieves extremely high performance on single processors from algorithmic optimizations and hand-coded routines and simultaneously scales very well on parallel machines.
Journal ArticleDOI

SETTLE: an analytical version of the SHAKE and RATTLE algorithm for rigid water models

TL;DR: In this article, an analytical algorithm called SETTLE for resetting the positions and velocities to satisfy the holonomic constraints on the rigid water model is presented, which is based on the Cartesian coordinate system and can be used in place of SHAKE and RATTLE.
Book ChapterDOI

Interaction Models for Water in Relation to Protein Hydration

TL;DR: In this article, a three-point charge model (on hydrogen and oxygen positions) with a Lennard-Jones 6-12 potential on the oxygen positions only was developed, and parameters for the model were determined from 12 molecular dynamics runs covering the two-dimensional parameter space of charge and oxygen repulsion.
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