Conn: A Functional Connectivity Toolbox for Correlated and Anticorrelated Brain Networks
Citations
2,179 citations
Cites methods from "Conn: A Functional Connectivity Too..."
...Although DPARSF has been widely used (including more recent R-fMRI pipelines CONN (Whitfield-Gabrieli and Nieto-Castanon, 2012) and FATCAT (Taylor and Saad, 2013)), the original DPARSF has fallen behind with some recent developments of R-fMRI methodologies, particularly in relation to R-fMRI methodological challenges....
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...Although DPARSF has been widely used (including more recent R-fMRI pipelines CONN (Whitfield-Gabrieli and Nieto-Castanon, 2012) and FATCAT (Taylor and Saad, 2013)), the original DPARSF has fallen behind with some recent developments of R-fMRI methodologies, particularly in relation to R-fMRI…...
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922 citations
884 citations
Cites methods from "Conn: A Functional Connectivity Too..."
...…graph-based topological analyses of brain networks, such as the Brain Connectivity Toolbox (BCT; Rubinov and Sporns, 2010), eConnectome (He et al., 2011), CONN (Whitfield-Gabrieli and Nieto-Castanon, 2012), Graph-Analysis Toolbox (GAT; Hosseini et al., 2012) and GraphVar (Kruschwitz et al., 2015)....
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...Software R-fMRI Preprocessing Network construction (static) Network construction (dynamic) Graph analysis Statistics Fle GUI Parallel computing Vis Website GRETNA X X X X X X X X × http//www.nitrc.org/projects/gretna/ BCT × × × X × × × × × https://sites.google.com/site/bctnet/ GAT × X × X X × X × X Not available PANDA × X × × × × X X × http//www.nitrc.org/projects/panda/ CONN X X × X X × X × X http//www.nitrc.org/projects/conn eConnectome × X × × × × X × X http://econnectome.umn.edu/ BrainNet Viewer × × × × × × X × X http://www.nitrc.org/projects/bnv/ GraphVar × X X X X X X × X http://www.nitrc.org/projects/graphvar/ Brainwaver × X × X × × × × X http://cran.r-project.org/web/packages/ brainwaver/ Fle, flexibility; GUI, graphical user interface; Vis, visualization....
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...In response, several freely available toolboxes have been developed to implement and visualize graph-based topological analyses of brain networks, such as the Brain Connectivity Toolbox (BCT; Rubinov and Sporns, 2010), eConnectome (He et al., 2011), CONN (Whitfield-Gabrieli and Nieto-Castanon, 2012), Graph-Analysis Toolbox (GAT; Hosseini et al., 2012) and GraphVar (Kruschwitz et al., 2015)....
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490 citations
477 citations
References
39,297 citations
Additional excerpts
...The toolbox also computes several graph theoretical measures (Achard and Bullmore, 2007; Bullmore and Sporns, 2009; Latora and Marchiori, 2001; Watts and Strogatz, 1998) characterizing structural properties of the estimated ROI-toROI functional connectivity networks, and allows users to perform…...
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10,708 citations
"Conn: A Functional Connectivity Too..." refers background or methods in this paper
...We describe the methods implemented in the Conn toolbox for the analysis of fcMRI data, together with examples of use and interscan reliability estimates of all the implemented fcMRI measures....
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...Such networks were initially discovered for the motor system (Biswal et al., 1995), but have also been discovered for both task-positive and task-negative (i.e., default, Raichle et al., 2001) neural systems (Fox et al., 2005; Fransson, 2005; Kelly et al., 2008; Uddin et al., 2009)....
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9,700 citations
"Conn: A Functional Connectivity Too..." refers methods in this paper
...The toolbox also computes several graph theoretical measures (Achard and Bullmore, 2007; Bullmore and Sporns, 2009; Latora and Marchiori, 2001; Watts and Strogatz, 1998) characterizing structural properties of the estimated ROI-toROI functional connectivity networks, and allows users to perform…...
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...This analysis uses the same PCC seed area as the previous seed-to-voxel analysis, and estimates the ROI-to-ROI functional connectivity (bivariate correlation measure) between this seed and a set of 84 ROIs defining the Brodmann areas (talairach atlas; Lancaster et al., 2000)....
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8,766 citations
"Conn: A Functional Connectivity Too..." refers background or methods in this paper
...…(ICA) (e.g., Beckmann et al., 2005; Calhoun et al., 2001, 2004), seed-driven functional connectivity magnetic resonance imaging (fcMRI) (e.g., Biswal et al., 1995; Fox et al., 2005; Greicius et al., 2003), and psychophysiological interactions used to characterize activation in a particular…...
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...Such networks were initially discovered for the motor system (Biswal et al., 1995), but have also been discovered for both task-positive and task-negative (i.e., default, Raichle et al., 2001) neural systems (Fox et al., 2005; Fransson, 2005; Kelly et al., 2008; Uddin et al., 2009)....
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...…connectivity toolbox Conn (www.nitrc.org/projects/conn) that implements the component-based noise correction method (CompCor) strategy for physiological and other noise source reduction, additional removal of movement, and temporal covariates, temporal filtering and windowing of the residual blood…...
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...…analytical approaches toward analyzing resting state functional connectivity (RSFC) data are ICA (e.g., Beckmann et al., 2005, 2009; Greicius et al., 2007; Stevens et al., 2009) and seed-driven RSFC (e.g., Biswal et al., 1995; Castellanos et al., 2008; Greicius et al., 2003; Fox et al., 2005)....
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...Low-frequency resting state networks ( < 0.1 Hz) reveal coherent, spontaneous fluctuations that delineate the functional architecture of the human brain (Biswal et al., 1995, 2010; Buckner et al., 2008; Fox et al., 2005; Fox and Raichle, 2007)....
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8,448 citations
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Trending Questions (1)
The paper does not specifically mention the use of the CONN toolbox in ICA analysis when studying clinical populations.