Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions
TL;DR: It is demonstrated that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle.
Abstract: The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.
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Huazhong Agricultural University1, University of Queensland2, University of Agriculture, Faisalabad3, Beijing Normal University4, COMSATS Institute of Information Technology5, Northeast Agricultural University6, Wellington Management Company7, Islamia University8, King Abdulaziz University9, Linyi University10, Yangtze University11
TL;DR: A comprehensive account of conventional as well as modern approaches to deal with heat and drought stresses have been presented here and a side-by-side critical discussion on salient responses and management strategies for these two important abiotic stresses provides a unique insight into the phenomena.
Abstract: Abiotic stresses are one of the major constraints to crop production and food security worldwide. The situation has aggravated due to the drastic and rapid changes in global climate. Heat and drought stress are undoubtedly the two most important stresses having huge impact on growth and productivity of the crops. It is very important to understand the physiological, biochemical and ecological interventions related to these stresses for better management. A wide range of plant responses to these stresses could be generalized into morphological, physiological and biochemical responses. Interestingly, this review provides a detailed account of plant responses to heat and drought stresses with special focus on highlighting the commonalities and differences. Crop growth and yields are negatively affected by sub-optimal water supply and abnormal temperatures due to physical damages, physiological disruptions and biochemical changes. Both these stresses have multi-lateral impacts and therefore, complex in mechanistic action. A better understanding of plant responses to these stresses has pragmatic implication for remedies and management. A comprehensive account of conventional as well as modern approaches to deal with heat and drought stresses have also been presented here. A side-by-side critical discussion on salient responses and management strategies for these two important abiotic stresses provides a unique insight into the phenomena. A holistic approach taking into account the different management options to deal with heat and drought stress simultaneously could be a win-win approach in future.
1,354 citations
TL;DR: Xylem pit anatomy that makes xylem less “leaky” and prone to cavitation warrants further exploration holding promise that such traits may improve plant productivity in water-limited environments without negatively impacting yield under adequate water conditions.
Abstract: Geneticists and breeders are positioned to breed plants with root traits that improve productivity under drought. However, a better understanding of root functional traits and how traits are related to whole plant strategies to increase crop productivity under different drought conditions is needed. Root traits associated with maintaining plant productivity under drought include small fine root diameters, long specific root length, and considerable root length density, especially at depths in soil with available water. In environments with late season water deficits, small xylem diameters in targeted seminal roots save soil water deep in the soil profile for use during crop maturation and result in improved yields. Capacity for deep root growth and large xylem diameters in deep roots may also improve root acquisition of water when ample water at depth is available. Xylem pit anatomy that makes xylem less "leaky" and prone to cavitation warrants further exploration holding promise that such traits may improve plant productivity in water-limited environments without negatively impacting yield under adequate water conditions. Rapid resumption of root growth following soil rewetting may improve plant productivity under episodic drought. Genetic control of many of these traits through breeding appears feasible. Several recent reviews have covered methods for screening root traits but an appreciation for the complexity of root systems (e.g., functional differences between fine and coarse roots) needs to be paired with these methods to successfully identify relevant traits for crop improvement. Screening of root traits at early stages in plant development can proxy traits at mature stages but verification is needed on a case by case basis that traits are linked to increased crop productivity under drought. Examples in lesquerella (Physaria) and rice (Oryza) show approaches to phenotyping of root traits and current understanding of root trait genetics for breeding.
971 citations
Cites background from "Control of root system architecture..."
...More recently Uga et al. (2013) have identified and cloned the DRO1 gene in rice on chromosome 9 which is associated with rooting depth due to an increased gravitropic response in root tips....
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TL;DR: An effective new paradigm is the targeted identification of specific genetic determinants of stress adaptation that have evolved in nature and their precise introgression into elite varieties.
Abstract: Crop yield reduction as a consequence of increasingly severe climatic events threatens global food security. Genetic loci that ensure productivity in challenging environments exist within the germplasm of crops, their wild relatives and species that are adapted to extreme environments. Selective breeding for the combination of beneficial loci in germplasm has improved yields in diverse environments throughout the history of agriculture. An effective new paradigm is the targeted identification of specific genetic determinants of stress adaptation that have evolved in nature and their precise introgression into elite varieties. These loci are often associated with distinct regulation or function, duplication and/or neofunctionalization of genes that maintain plant homeostasis.
727 citations
TL;DR: How engineering hormone signaling in specific cells and cellular domains can facilitate improved plant responses to drought is discussed and current knowledge and future questions central to the quest to produce high-yield, drought-resistant crops are explored.
Abstract: Drought alone causes more annual loss in crop yield than all pathogens combined. To adapt to moisture gradients in soil, plants alter their physiology, modify root growth and architecture, and close stomata on their aboveground segments. These tissue-specific responses modify the flux of cellular signals, resulting in early flowering or stunted growth and, often, reduced yield. Physiological and molecular analyses of the model plant Arabidopsis thaliana have identified phytohormone signaling as key for regulating the response to drought or water insufficiency. Here we discuss how engineering hormone signaling in specific cells and cellular domains can facilitate improved plant responses to drought. We explore current knowledge and future questions central to the quest to produce high-yield, drought-resistant crops.
693 citations
TL;DR: Control of ABA or stress signaling factor expression can improve tolerance to environmental stresses and the important roles of these TFs in crosstalk among abiotic stress responses will be discussed.
Abstract: Drought negatively impacts plant growth and the productivity of crops around the world. Understanding the molecular mechanisms in the drought response is important for improvement of drought tolerance using molecular techniques. In plants, abscisic acid (ABA) is accumulated under osmotic stress conditions caused by drought, and has a key role in stress responses and tolerance. Comprehensive molecular analyses have shown that ABA regulates the expression of many genes under osmotic stress conditions, and the ABA-responsive element (ABRE) is the major cis-element for ABA-responsive gene expression. Transcription factors (TFs) are master regulators of gene expression. ABRE-binding protein and ABRE-binding factor TFs control gene expression in an ABA-dependent manner. SNF1-related protein kinases 2, group A 2C-type protein phosphatases, and ABA receptors were shown to control the ABA signaling pathway. ABA-independent signaling pathways such as dehydration-responsive element-binding protein TFs and NAC TFs are also involved in stress responses including drought, heat, and cold. Recent studies have suggested that there are interactions between the major ABA signaling pathway and other signaling factors in stress responses. The important roles of these TFs in crosstalk among abiotic stress responses will be discussed. Control of ABA or stress signaling factor expression can improve tolerance to environmental stresses. Recent studies using crops have shown that stress-specific overexpression of TFs improves drought tolerance and grain yield compared with controls in the field.
664 citations
Cites background from "Control of root system architecture..."
...Keywords: ABA, transcription factor, signal transduction, abiotic stress, drought...
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...DEEPER ROOTING 1 (DRO1), a QTL controlling root growth angle in rice, was cloned and characterized (Uga et al., 2013)....
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References
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TL;DR: Van Genuchten et al. as mentioned in this paper proposed a closed-form analytical expression for predicting the hydraulic conductivity of unsaturated soils based on the Mualem theory, which can be used to predict the unsaturated hydraulic flow and mass transport in unsaturated zone.
Abstract: A new and relatively simple equation for the soil-water content-pressure head curve, 8(h), is described in this paper. The particular form of the equation enables one to derive closedform analytical expressions for the relative hydraulic conductivity, Kr, when substituted in the predictive conductivity models of N.T. Burdine or Y. Mualem. The resulting expressions for Kr(h) contain three independent parameters which may be obtained by fitting the proposed soil-water retention model to experimental data. Results obtained with the closed-form analytical expressions based on the Mualem theory are compared with observed hydraulic conductivity data for five soils with a wide range of hydraulic properties. The unsaturated hydraulic conductivity is predicted well in four out of five cases. It is found that a reasonable description of the soil-water retention curve at low water contents is important for an accurate prediction of the unsaturated hydraulic conductivity. Additional Index Words: soil-water diffusivity, soil-water retention curve. van Genuchten, M. Th. 1980. A closed-form equation for predicting the hydraulic conductivity of unsaturated soils. Soil Sci. Soc. Am. J. 44:892-898. T USE OF NUMERICAL MODELS for simulating fluid flow and mass transport in the unsaturated zone has become increasingly popular the last few years. Recent literature indeed demonstrates that much effort is put into the development of such models (Reeves and Duguid, 1975; Segol, 1976; Vauclin et al., 1979). Unfortunately, it appears that the ability to fully characterize the simulated system has not kept pace with the numerical and modeling expertise. Probably the single most important factor limiting the successful application of unsaturated flow theory to actual field problems is the lack of information regarding the parameters entering the governing transfer equations. Reliable estimates of the unsaturated hydraulic conductivity are especially difficult to obtain, partly because of its extensive variability in the field, and partly because measuring this parameter is time-consuming and expensive. Several investigators have, for these reasons, used models for calculating the unsaturated conductivity from the more easily measured soil-water retention curve. Very popular among these models has been the Millington-Quirk method (Millington and Quirk, 1961), various forms of which have been applied with some success in a number of studies (cf. Jackson et al., 1965; Jackson, 1972; Green and Corey, 1971; Bruce, 1972). Unfortunately, this method has the disadvantage of producing tabular results which, for example when applied to nonhomogeneous soils in multidimensional unsaturated flow models, are quite tedious to use. Closed-form analytical expressions for predicting 1 Contribution from the U. S. Salinity Laboratory, AR-SEA, USDA, Riverside, CA 92501. Received 29 June 1979. Approved 19 May I960. 'Soil Scientist, Dep. of Soil and Environmental Sciences, University of California, Riverside, CA 92521. The author is located at the U. S. Salinity Lab., 4500 Glenwood Dr., Riverside, CA 92502. the unsaturated hydraulic conductivity have also been developed. For example, Brooks and Corey (1964) and Jeppson (1974) each used an analytical expression for the conductivity based on the Burdine theory (Burdine, 1953). Brooks and Corey (1964, 1966) obtained fairly accurate predictions with their equations, even though a discontinuity is present in the slope of both the soil-water retention curve and the unsaturated hydraulic conductivity curve at some negative value of the pressure head (this point is often referred to as the bubbling pressure). Such a discontinuity sometimes prevents rapid convergence in numerical saturated-unsaturated flow problems. It also appears that predictions based on the Brooks and Corey equations are somewhat less accurate than those obtained with various forms of the (modified) Millington-Quirk method. Recently Mualem (1976a) derived a new model for predicting the hydraulic conductivity from knowledge of the soil-water retention curve and the conductivity at saturation. Mualem's derivation leads to a simple integral formula for the unsaturated hydraulic conductivity which enables one to derive closed-form analytical expressions, provided suitable equations for the soil-water retention curves are available. It is the purpose of this paper to derive such expressions using an equation for the soil-water retention curve which is both continuous and has a continuous slope. The resulting conductivity models generally contain three independent parameters which may be obtained by matching the proposed soil-water retention curve to experimental data. Results obtained with the closedform equations based on the Mualem theory will be compared with observed data for a few soils having widely varying hydraulic properties. THEORETICAL Equations Based on Mualem's Model The following equation was derived by Mualem (1976a) for predicting the relative hydraulic conductivity (Kr) from knowledge of the soil-water retention curve
22,781 citations
TL;DR: Cotransfection experiments with natural and synthetic AuxRE reporter genes and effector genes encoding Aux/IAA proteins showed that overexpression of Aux/ IAA proteins in carrot protoplasts resulted in specific repression of TGTCTC Auxre reporter gene expression.
Abstract: A highly active synthetic auxin response element (AuxRE), referred to as DR5, was created by performing site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter. DR5 consisted of tandem direct repeats of 11 bp that included the auxin-responsive TGTCTC element. The DR5 AuxRE showed greater auxin responsiveness than a natural composite AuxRE and the GH3 promoter when assayed by transient expression in carrot protoplasts or in stably transformed Arabidopsis seedlings, and it provides a useful reporter gene for studying auxin-responsive transcription in wild-type plants and mutants. An auxin response transcription factor, ARF1, bound with specificity to the DR5 AuxRE in vitro and interacted with Aux/IAA proteins in a yeast two-hybrid system. Cotransfection experiments with natural and synthetic AuxRE reporter genes and effector genes encoding Aux/IAA proteins showed that overexpression of Aux/IAA proteins in carrot protoplasts resulted in specific repression of TGTCTC AuxRE reporter gene expression.
1,912 citations
TL;DR: The dynamic, differential distribution of the hormone auxin within plant tissues controls an impressive variety of developmental processes, which tailor plant growth and morphology to environmental conditions.
1,124 citations
TL;DR: A molecular approach to investigate auxin signaling in plants has led to the identification of several classes of early/primary auxin response genes, and a family of trans-acting transcription factors that bind with specificity to AuxREs has been characterized.
Abstract: A molecular approach to investigate auxin signaling in plants has led to the identification of several classes of early/primary auxin response genes. Within the promoters of these genes, cis elements that confer auxin responsiveness (referred to as auxin-response elements or AuxREs) have been defined, and a family of trans-acting transcription factors (auxin-response factors or ARFs) that bind with specificity to AuxREs has been characterized. A family of auxin regulated proteins referred to as Aux/IAA proteins also play a key role in regulating these auxin-response genes. Auxin may regulate transcription on early response genes by influencing the types of interactions between ARFs and Aux/IAAs.
1,109 citations
TL;DR: Results indicate that Hd 3a encodes a protein closely related to Arabidopsis FT and that the function and regulatory relationship with Hd1 and CO, respectively, of Hd3a and FT are conserved between rice (an SD plant) andArabidopsis (a long-day plant).
Abstract: ;Heading date 3a (Hd3a) has been detected as a heading-date-related quantitative trait locus in a cross between rice cultivars Nipponbare and Kasalath. A previous study revealed that the Kasalath allele of Hd3a promotes heading under short-day (SD) conditions. High-resolution linkage mapping located the Hd3a locus in a 20-kb genomic region. In this region, we found a candidate gene that shows high similarity to the FLOWERING LOCUS T (FT) gene, which promotes flowering in Arabidopsis. Introduction of the gene caused an early-heading phenotype in rice. The transcript levels of Hd3a were increased under SD conditions. The rice Heading date 1 (Hd1) gene, a homolog of CONSTANS (CO), has been shown to promote heading under SD conditions. By expression analysis, we showed that the amount of Hd3a mRNA is up-regulated by Hd1 under SD conditions, suggesting that Hd3a promotes heading under the control of Hd1. These results indicate that Hd3a encodes a protein closely related to Arabidopsis FT and that the function and regulatory relationship with Hd1 and CO, respectively, of Hd3a and FT are conserved between rice (an SD plant) and Arabidopsis (a long-day plant).
1,000 citations