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Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

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TLDR
What is known about host switching leading to viral emergence from known examples is reviewed, considering the evolutionary mechanisms, virus-host interactions, host range barriers to infection, and processes that allow efficient host-to-host transmission in the new host population.
Abstract
Host range is a viral property reflecting natural hosts that are infected either as part of a principal transmission cycle or, less commonly, as "spillover" infections into alternative hosts. Rarely, viruses gain the ability to spread efficiently within a new host that was not previously exposed or susceptible. These transfers involve either increased exposure or the acquisition of variations that allow them to overcome barriers to infection of the new hosts. In these cases, devastating outbreaks can result. Steps involved in transfers of viruses to new hosts include contact between the virus and the host, infection of an initial individual leading to amplification and an outbreak, and the generation within the original or new host of viral variants that have the ability to spread efficiently between individuals in populations of the new host. Here we review what is known about host switching leading to viral emergence from known examples, considering the evolutionary mechanisms, virus-host interactions, host range barriers to infection, and processes that allow efficient host-to-host transmission in the new host population.

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Prediction and prevention of the next pandemic zoonosis

TL;DR: In this paper, the authors review what is known about the pathogens that emerge, the hosts that they originate in, and the factors that drive their emergence and discuss challenges to their control and new efforts to predict pandemics.
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Host and viral traits predict zoonotic spillover from mammals

TL;DR: It is demonstrated that bats harbour a significantly higher proportion of zoonotic viruses than all other mammalian orders, and the taxa and geographic regions with the largest estimated number of ‘missing viruses’ and ‘ Missing zoonoses’ are identified and therefore of highest value for future surveillance.
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Influenza virus evolution, host adaptation, and pandemic formation.

TL;DR: The evolution of influenza A viruses in their reservoir hosts is reviewed and genetic changes associated with introduction of novel viruses into humans, leading to pandemics and the establishment of seasonal viruses are discussed.
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Pathways to zoonotic spillover

TL;DR: A synthetic framework for animal-to-human transmission that integrates the relevant mechanisms reveals that all zoonotic pathogens must overcome a hierarchical series of barriers to cause spillover infections in humans.
References
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Journal ArticleDOI

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Receptor Binding and Membrane Fusion in Virus Entry: The Influenza Hemagglutinin

TL;DR: Comparisons to the soluble N-ethyl-maleimide-sensitive factor attachment protein receptor (SNARE) protein complex of vesicle fusion suggests that these molecules are all in the fusion-activated conformation and that the juxtaposition of the membrane anchor and fusion peptide, a recurring feature, is involved in the fused mechanism.
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Superspreading and the effect of individual variation on disease emergence

TL;DR: It is shown that contact tracing data from eight directly transmitted diseases shows that the distribution of individual infectiousness around R0 is often highly skewed, and implications for outbreak control are explored, showing that individual-specific control measures outperform population-wide measures.
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