Database resources of the National Center for Biotechnology Information
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Cites background or methods from "Database resources of the National ..."
...The two main public repositories of protein sequence data are UniProtKB (4) and the GenPept database from NCBI ( 13 )....
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...Where possible, we transfer the annotation from UniProtKB sequences to the equivalent sequence in GenPept, by using the EMBL/GenBank cross-references ( 13 ,14) in the UniProtKB entry and ensuring that the CRC64 checksums of the sequences from the two databases are the same....
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References
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"Database resources of the National ..." refers methods in this paper
...The Basic Local Alignment Search Tool (BLAST) programs (9,10) perform sequence-similarity searches against a variety of sequence databases, returning a set of gapped alignments between the query and database sequences, and links to full database records, to UniGene, LocusLink, the MMDB or GEO....
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70,111 citations
"Database resources of the National ..." refers methods in this paper
...This composition-based statistical treatment, used in conventional protein BLAST searches as well as PSI-BLAST (10) searches, tends to reduce the number of false-positive database hits (12)....
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...The Basic Local Alignment Search Tool (BLAST) programs (9,10) perform sequence-similarity searches against a variety of sequence databases, returning a set of gapped alignments between the query and database sequences, and links to full database records, to UniGene, LocusLink, the MMDB or GEO....
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63,427 citations
35,225 citations
"Database resources of the National ..." refers methods in this paper
...Currently Biosystems receives data from the Kyoto Encyclopedia of Genes and Genomes (KEGG) (61-63), Bio-Cyc (64), Reactome (65), the Pathway Interaction Database (66), WikiPathways (67, 68) and Gene Ontology (69) ....
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34,239 citations
"Database resources of the National ..." refers methods in this paper
...The NCBI MMDB, built by processing entries from the Protein Data Bank ( 5 ), is described by Wang et al. (7)....
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