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Journal ArticleDOI

Design of the blood group AB glycotope.

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TLDR
A polymeric conjugate is synthesized in such a way that de-N-acetylated A-trisaccharide is attached to a polymer via the nitrogen in position C-2 of the galactosamine residue, in order to test the hypothesis that the supposed AB-epitope should be situated in the part of the molecule that is opposite to the NHAc group of GalNAc residue.
Abstract
Although the nature of the blood groups A and B has been comprehensively studied for a long time, it is still unclear as to what exactly is the epitope that is recognized by antibodies having AB specificity, i.e. monoclonal and polyclonal antibodies which are capable of interacting equally well with the antigens GalNAcalpha 1-3(Fucalpha 1-2)Gal (A trisaccharide) and Galalpha 1-3(Fucalpha 1-2)Gal (B trisaccharide), but do not react with their common fragment Fucalpha 1-2Gal. We have supposed that besides Fucalpha 1-2Gal, A and B antigens have one more shared epitope. The trisaccharides A and B are practically identical from the conformational point of view, the only difference being situated at position 2 of Galalpha residue, i.e. trisaccharide A has a NHAc group, whereas trisaccharide B has a hydroxyl group (see formulas). We have hypothesized that the AB-epitope should be situated in the part of the molecule that is opposite to the NHAc group of GalNAc residue. In order to test this hypothesis we have synthesized a polymeric conjugate in such a way that de-N-acetylated A-trisaccharide is attached to a polymer via the nitrogen in position C-2 of the galactosamine residue. In this conjugate the supposed AB-epitope should be maximally accessible for antibodies from the solution, whereas the discrimination site of antigens A and B by the antibodies should be maximally hidden due to the close proximity of the polymer. Interaction with several anti-AB monoclonal antibodies revealed that a part of them really interacted with the synthetic AB-glycotope, thus confirming our hypothesis. Moreover, similar antibodies were revealed in the blood of healthy blood group 0 donors. Analysis of spatial models was performed in addition to identify the hydroxyl groups of Fuc, Galalpha, and Galbeta residues, which are particularly involved in the composition of the AB-glycotope.

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Citations
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The ABO blood group system revisited: a review and update.

TL;DR: A review of key findings and recent progress made toward further understanding of this surprisingly polymorphic system of antigens of the ABO system is summarized.
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Anti-carbohydrate antibodies of normal sera: findings, surprises and challenges.

TL;DR: The microchip format glycan array is used to characterize the individual carbohydrate recognition patterns by antibodies (Ab) in sera of 106 healthy donors and it is found that Ab are capable of recognizing the short inner core typical for glycolipids and glycoproteins (-GalNAcalpha) as a fragment of bigger glycans.
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Anti-carbohydrate antibodies elicited by polyvalent display on a viral scaffold.

TL;DR: Comparable performance was observed for the virus‐based polyclonal versus a commercial monoclonal antibody raised against the globo‐H tetrasaccharide; this highlights the utility of the glycan microarray for both quality control and rapid in‐depth analysis.
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Glycopeptide dendrimers. Part II.

TL;DR: Glycopeptide dendrimers can be used as inhibitors of cell surface protein‐carbohydrate interactions, intervention with bacterial adhesion, for studying of recognition processes, diagnostics, imaging and contrast agents, mimetics, for complexation of different cationts, as site‐specific molecular delivery systems, for therapeutic purposes, as immunodiagnostics and in drug design.
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Identification of the sialic acid structures recognized by minute virus of mice and the role of binding affinity in virulence adaptation.

TL;DR: This study identifies the sialic acid structures recognized by MVM and provides rationale for the tropism of MVM for malignant transformed cells that contain sLex motifs and the neurotropism ofMVMi, which is likely mediated via interactions with multisialylated glycans known to be tumor cell markers.
References
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Journal ArticleDOI

Validation of the general purpose Tripos 5.2 force field

TL;DR: In this paper, a molecular mechanics force field implemented in the Sybyl program is described along with a statistical evaluation of its efficiency on a variety of compounds by analysis of internal coordinates and thermodynamic barriers.
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Synthesis of polymeric neoglycoconjugates based on N-substituted polyacrylamides.

TL;DR: Pseudopolysaccharides proved to be a suitable form of antigen for activation of polystyrene and poly(vinyl chloride) plates (ELISA) plates and nitrocellulose membranes (dot blot), being advantageous over traditional neoglycoproteins.
Journal ArticleDOI

Computer simulation of histo-blood group oligosaccharides: energy maps of all constituting disaccharides and potential energy surfaces of 14 ABH and Lewis carbohydrate antigens.

TL;DR: Of special interest are the several different alignments that can be proposed for these molecules, which yield a realistic definition of the three-dimensional features of the epitopes thereby providing essential information about how carbohydrate antigens are recognized by proteins.
Journal Article

Genetic regulation of the expression of ABH and Lewis antigens in tissues.

TL;DR: Examples of these phenomena are presented in an effort to gain further insight into the genetic regulation of the expression of these complex oligosaccharide molecules.
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