Open AccessBook
Design Patterns: Elements of Reusable Object-Oriented Software
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TLDR
The book is an introduction to the idea of design patterns in software engineering, and a catalog of twenty-three common patterns, which most experienced OOP designers will find out they've known about patterns all along.Abstract:
The book is an introduction to the idea of design patterns in software engineering, and a catalog of twenty-three common patterns. The nice thing is, most experienced OOP designers will find out they've known about patterns all along. It's just that they've never considered them as such, or tried to centralize the idea behind a given pattern so that it will be easily reusable.read more
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Journal ArticleDOI
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss,Patrick D. Schloss,Sarah L. Westcott,Sarah L. Westcott,Thomas Ryabin,Justine R. Hall,Martin Hartmann,Emily B. Hollister,Ryan A. Lesniewski,Brian B. Oakley,Donovan H. Parks,Courtney J. Robinson,Jason W. Sahl,Blaz Stres,Gerhard G. Thallinger,David J. Van Horn,Carolyn F. Weber +16 more
TL;DR: M mothur is used as a case study to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and describe the α and β diversity of eight marine samples previously characterized by pyrosequencing of 16S rRNA gene fragments.
Book
Refactoring: Improving the Design of Existing Code
TL;DR: Almost every expert in Object-Oriented Development stresses the importance of iterative development, but how do you add function to the existing code base while still preserving its design integrity?
Journal ArticleDOI
Aspect-oriented programming
TL;DR: This work proposes to use aspect-orientation to automate the calculation of statistics for database optimization and shows how nicely the update functionality can be modularized in an aspect and how easy it is to specify the exact places and the time when statistics updates should be performed to speed up complex queries.
The unified modelling language reference manual
TL;DR: The Unified Modeling Language Reference Manual as discussed by the authors provides an excellent real-world guide to working with UML, from structured design methods of the '60s and '70s to the competing object-oriented design standards that were unified to create UML.
Journal ArticleDOI
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
TL;DR: Galaxy Pages are interactive, web-based documents that provide users with a medium to communicate a complete computational analysis and provide support for capturing the context and intent of computational methods.
References
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Journal ArticleDOI
Encapsulators: a new software paradigm in Smalltalk-80
TL;DR: A simple approach to multiply polymorphic expressions which preserves all the benefits of good object-oriented programming style in the face of any degree of polymorphism is described.
Proceedings ArticleDOI
Glyphs: flyweight objects for user interfaces
Paul Calder,Mark A. Linton +1 more
TL;DR: To show that glyphs are simple and efficient, a WYSIWYG document editor is implemented that is comparable to that of similar editors built with current tools, but its implementation is much simpler.
Proceedings ArticleDOI
IRIS Inventor, a 3D graphics toolkit
TL;DR: Encapsulation of data and methods in high-level graphical objects allows Inventor to provide a significant improvement in usability to developers, as compared to the standard, low-level set of graphics primitives provided in most other graphics libraries.
Book
Internet System Handbook
Daniel C. Lynch,Marshall T. Rose +1 more
TL;DR: The Billion-Node Internet and Future Directions, a review of the internet evolution and future Directions, and annotated Bibliography are published.
Proceedings ArticleDOI
The Mesa programming environment
TL;DR: The Mesa programming facilities of the Xerox Development Environment (XDE) are described, the user illusion, the set of programming tools, and the facilities available for augmenting the environment.