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Detection and Quantification of Tightly Bound Zn2+ in Blood Serum Using a Photocaged Chelator and a DNAzyme Fluorescent Sensor.

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TLDR
In this paper, a photocaged chelator, XDPAdeCage, was used to extract the Zn2+ from the blood serum and then released the chelated Zn 2+ into a buffer using 365 nm light for quantification by an 8-17 DNAzyme sensor.
Abstract
DNAzymes have emerged as a powerful class of sensors for metal ions due to their high selectivity over a wide range of metal ions, allowing for on-site and real-time detection. Despite much progress made in this area, detecting and quantifying tightly bound metal ions, such as those in the blood serum, remain a challenge because the DNAzyme sensors reported so far can detect only mobile metal ions that are accessible to bind the DNAzymes. To overcome this major limitation, we report the use of a photocaged chelator, XDPAdeCage to extract the Zn2+ from the blood serum and then release the chelated Zn2+ into a buffer using 365 nm light for quantification by an 8-17 DNAzyme sensor. Protocols to chelate, uncage, extract, and detect metal ions in the serum have been developed and optimized. Because DNAzyme sensors for other metal ions have already been reported and more DNAzyme sensors can be obtained using in vitro selection, the method reported in this work will significantly expand the applications of the DNAzyme sensors from sensing metal ions that are not only free but also bound to other biomolecules in biological and environmental samples.

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Citations
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Journal ArticleDOI

Rapid heavy metal sensing platform: A case of triple signal amplification strategy for the sensitive detection of serum copper

TL;DR: In this article, a triple signal-amplified electrochemical sensing platform based on metal-dependent DNAzymes was fabricated for sensitive determination of heavy metals in serum (copper as a model target).
Journal ArticleDOI

A ratiometric fluorescence sensor for 5-hydroxymethylfurfural detection based on strand displacement reaction

TL;DR: In this article , a ratiometric fluorescence sensor based on strand displacement reaction and magnetic separation was designed for sensitive and selective detection of 5-hydroxymethylfurfural (HMF) with the help of MnO2 nanosheets.
Journal ArticleDOI

A ratiometric fluorescence sensor for 5-hydroxymethylfurfural detection based on strand displacement reaction.

TL;DR: In this article, a ratiometric fluorescence sensor based on strand displacement reaction and magnetic separation was designed for sensitive and selective detection of 5-hydroxymethylfurfural (HMF) with the help of MnO2 nanosheets.
Journal ArticleDOI

A DNAzyme-based normalized fluorescence strategy for direct quantification of endogenous zinc in living cells

TL;DR: In this article , the maximum fluorescence of an identical fluorophore as a reference was used to quantify endogenous zinc in living cells by in situ fluorescence imaging, implying promising potential in fundamental study and early disease diagnosis.
Journal ArticleDOI

Overcoming Major Barriers to Developing Successful Sensors for Practical Applications Using Functional Nucleic Acids.

TL;DR: This review identifies several barriers to developing successful sensors for practical applications, including the lack of general methods to generate receptors for a wide range of targets, improve sensor selectivity to overcome interferences, and transduce the selective binding to different optical, electrochemical, and other signals.
References
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Journal ArticleDOI

A Colorimetric Lead Biosensor Using DNAzyme-Directed Assembly of Gold Nanoparticles

TL;DR: The concept developed here can be applied to the design of nucleic acid enzyme/nanoparticle sensors for analytes that are subject to in vitro selection, and thus can significantly expand the scope of nanomaterial applications and provide a novel approach to designing simple colorimetric biosensors.
Journal ArticleDOI

A DNA enzyme that cleaves RNA

TL;DR: Using in vitro selection techniques, a DNA enzyme is obtained that catalyzes the Pb(2+)-dependent cleavage of an RNA phosphoester in a reaction that proceeds with rapid turnover, and compares favorably to that of known RNA enzymes.
Journal ArticleDOI

Synthetic fluorescent sensors for studying the cell biology of metals

TL;DR: A review of available synthetic small-molecule sensor types for fluorescence detection of cellular metals presents a host of emerging opportunities for visualizing, in real time, aspects of metal accumulation, trafficking, and function or toxicity in living systems.
Journal ArticleDOI

Metal Sensing by DNA

TL;DR: Each metal ion and the known DNA sequences for its sensing are reviewed and the fundamental aspect of metal binding is emphasized, emphasizing the distinct chemical property of each metal.
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