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Detection of SARS-CoV-2 and its S and N proteins using surface enhanced Raman spectroscopy

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TLDR
In this paper, a very distinct spectroscopic signature of the SARS-CoV-2 virus can be obtained using surface enhanced Raman spectroscopy (SERS) of virion particles.
Abstract
The COVID-19 pandemic demonstrated the critical need for accurate and rapid testing for virus detection. This need has generated a high number of new testing methods aimed at replacing RT-PCR, which is the golden standard for testing. Most of the testing techniques are based on biochemistry methods and require chemicals that are often expensive and the supply might become scarce in a large crisis. In the present paper we suggest the use of methods based on physics that leverage novel nanomaterials. We demonstrate that using Surface Enhanced Raman Spectroscopy (SERS) of virion particles a very distinct spectroscopic signature of the SARS-CoV-2 virus can be obtained. We demonstrate that the spectra are mainly composed by signals from the spike (S) and nucleocapsid (N) proteins. It is believed that a clinical test using SERS can be developed. The test will be fast, inexpensive, and reliable. It is also clear that SERS can be used for analysis of structural changes on the S and N proteins. This will be an example of application of nanotechnology and properties of nanoparticles for health and social related matters.

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Journal ArticleDOI

Surface-enhanced Raman scattering-based immunoassay for severe acute respiratory syndrome coronavirus 2

TL;DR: A surface-enhanced Raman scattering (SERS)-based immunoassay involving an antibody pair, SERS-active hollow Au nanoparticles (NPs), and magnetic beads for the detection of SARS-CoV-2 was presented in this article .
Journal ArticleDOI

Probing the mutation independent interaction of DNA probes with SARS-CoV-2 variants through a combination of surface-enhanced Raman scattering and machine learning

TL;DR: In this article , a set of DNA probes targeting a specific segment of the nucleocapsid phosphoprotein (N) gene of SARS-CoV-2 with high binding efficiency was developed.
Journal ArticleDOI

High-sensitivity and point-of-care detection of SARS-CoV-2 from nasal and throat swabs by magnetic SERS biosensor

TL;DR: In this article , a point-of-care detection method based on magnetic SERS biosensor composed of Fe3O4-Au nanocomposite and Au nanoneedles array was developed to detect SARS-CoV-2 directly.
Journal ArticleDOI

Plasmonic nanostructure-enhanced Raman scattering for detection of SARS-CoV-2 nucleocapsid protein and spike protein variants

TL;DR: In this paper , a surface-enhanced Raman scattering (SERS) response from the plasma-engineered, variant-specific antibody-functionalized silver nanoparticle-based nanoassemblies (AgMEN) interacting with the SARS-CoV-2 spike (S) and nucleocapsid (N) proteins was demonstrated.
References
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TL;DR: Fityk is portable, open-source software for nonlinear curve fitting and data analysis that enables Pawley refinement of powder diffraction data and size–strain analysis.
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Transmission of COVID-19 virus by droplets and aerosols: A critical review on the unresolved dichotomy.

TL;DR: It is demonstrated that the nosocomial transmission by airborne SARS-CoV-2 viral-laden aerosols in healthcare facilities may be plausible and clearly defined, science-based administrative, clinical, and physical measures are of paramount importance to eradicate the COVID-19 pandemic from the world.
Journal ArticleDOI

Raman spectroscopy of proteins: from peptides to large assemblies

TL;DR: Raman spectroscopy has become a versatile tool in protein science and biotechnology as discussed by the authors, and examples of use in protein structural biology and selected industrial applications are discussed in Section 2.1.
Journal ArticleDOI

Anisotropic metal nanoparticles for surface enhanced Raman scattering

TL;DR: The effect of varying particle size and shape on the SERS signal is described, focusing on the most common anisotropic morphologies used for SERS, at a general perspective toward understanding the general key factors and highlighting the difficulty in quantitatively determining SERS performance.
Journal ArticleDOI

COVID-19 diagnosis -A review of current methods.

TL;DR: The key structural components of the virus were presented to provide the audience with an understanding of the scientific principles behind the testing tools and the methods in the early research state.
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