DiveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors
Citations
248 citations
198 citations
186 citations
186 citations
Cites background or methods from "DiveRsity: An R package for the est..."
...This analysis does not require standardization for markers with few allelic states (e.g. SNPs; Meirmans & Hedrick 2011); therefore, we do not report results for any ‘corrected’ FST analogues such as G’ST or Jost’s D (Keenan et al. 2013)....
[...]
...We then estimated population genetic differentiation by calculating FST (Weir & Cockerham 1984) using the R package DIVERSITY (Keenan et al. 2013)....
[...]
...SNPs; Meirmans & Hedrick 2011); therefore, we do not report results for any ‘corrected’ FST analogues such as G’ST or Jost’s D (Keenan et al. 2013)....
[...]
182 citations
References
17,890 citations
"DiveRsity: An R package for the est..." refers methods in this paper
...This R package allows the estimation of various population genetic summary statistics including the two ‘traditional’ F-statistics analogues; h (Weir & Cockerham 1984) and GST (Nei & Chesser 1983), and the two ‘new’ differentiation statistics; G0ST (Hedrick 2005) and DJost (Jost 2008), as well as…...
[...]
2,262 citations
"DiveRsity: An R package for the est..." refers background or methods in this paper
...F-statistics estimators (e.g. h,GST) suffer from an incompatibility when applied to highly polymorphic microsatellite markers (Hedrick 1999; Jost 2008), as a result of their negative dependence on within subpopulation heterozygosity (Jost 2008)....
[...]
...Attempts have been made to overcome this issue, most notably by Hedrick (2005), with the development of G0ST and more recently, Jost (2008) with the development of DJost....
[...]
...It is not the purpose of this study to elaborate on such issues; however, interested readers are encouraged to see Jost (2008), Meirmans &Hedrick (2011) andWhitlock (2011) for useful reviews....
[...]
...…population genetic summary statistics including the two ‘traditional’ F-statistics analogues; h (Weir & Cockerham 1984) and GST (Nei & Chesser 1983), and the two ‘new’ differentiation statistics; G0ST (Hedrick 2005) and DJost (Jost 2008), as well as their unbiased/nearly unbiased estimators....
[...]
...This R package allows the estimation of various population genetic summary statistics including the two ‘traditional’ F-statistics analogues; h (Weir & Cockerham 1984) and GST (Nei & Chesser 1983), and the two ‘new’ differentiation statistics; GST (Hedrick 2005) and DJost (Jost 2008), as well as their unbiased/nearly unbiased estimators....
[...]
1,887 citations
"DiveRsity: An R package for the est..." refers methods in this paper
...This decision was taken given the lack of meaningful information conveyed through the use of P-values in this context, as well as the many misconceptions that exist regarding the biological interpretation of P-values in relation to these statistics (Wagenmakers 2007)....
[...]
1,846 citations