EasyModeller: A graphical interface to MODELLER
Citations
198 citations
Cites background or methods from "EasyModeller: A graphical interface..."
...Three-dimensional structural model of 3CLpro The structural model of FIPV 3CLpro was built based on TGEV 3CLpro (PDB ID: 4F49) [28] using the EasyModeller program (version 4.0) [56] and superimposed on the 3CLpro structure of MERS-CoV (PDB ID: 4WME, teal) [40]....
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...(A) Superimposition of MERS-CoV 3CLpro (PDB ID: 4WME, teal) [40] and FIPV 3CLpro (red) modeled using Modeller [56] based on TGEV 3CLpro as a template (PDB ID: 4F49) [28]....
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...0) [56] and superimposed on the 3CLpro structure of MERS-CoV (PDB ID: 4WME, teal) [40]....
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190 citations
135 citations
Cites methods from "EasyModeller: A graphical interface..."
...Up till now, there have been a few attempts earlier to simplify the use of MODELLER by providing a GUI framework (EasyModeller [21], SWIFT MODELLER [22])....
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114 citations
Cites methods from "EasyModeller: A graphical interface..."
...MODELLER is one of the best and commonly used software for homology modeling of protein three-dimensional structures(Kuntal et al. 2010) The amino acid sequence of the GLUT4 protein from human was retrieved from Swiss-Prot protein sequence database (Bairoch and Apweile 2000)....
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103 citations
References
46,130 citations
"EasyModeller: A graphical interface..." refers methods in this paper
...The dynamics output binary trajectory files are also saved in the same folder which can be read in by visualization software such as CHIMERA [18] or VMD [19]....
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...Humphrey W, Dalke A, Schulten K: VMD: visual molecular dynamics....
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35,698 citations
34,239 citations
"EasyModeller: A graphical interface..." refers background in this paper
...Structural information of biological macromolecules is readily available in the Protein Data Bank (PDB) [1], http://www.pdb.org....
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...The basic template information like its name, chains, heteroatoms, etc are shown in the display area and the CHAIN is automatically set default to the first chain as set in the PDB file....
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...By Sep 2009, the PDB contained ~ 60,713 experimental protein structures that can be grouped into ~ 3500 families [2]....
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...Structural information of biological macromolecules is readily available in the Protein Data Bank (PDB) [1], http://www....
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...As soon as the model is generated, the best model is displayed in the users default PDB viewer like Rasmol [17] as in Fig....
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12,386 citations