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Engineered receptors for human cytomegalovirus that are orthogonal to normal human biology.

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TLDR
Purified soluble PDGFRα carrying a targeted mutation succeeded in displaying wild type affinity for HCMV trimer with a simultaneous loss of PDGF binding, and neutralizes trimer-only and trimer/pentamer-expressing HCMv strains infecting fibroblasts or epithelial cells.
Abstract
A trimeric glycoprotein complex on the surface of human cytomegalovirus (HCMV) binds to platelet-derived growth factor (PDGF) receptor α (PDGFRα) to mediate host cell recognition and fusion of the viral and cellular membranes Soluble PDGFRα potently neutralizes HCMV in tissue culture, and its potential use as an antiviral therapeutic has the benefit that any escape mutants will likely be attenuated However, PDGFRα binds multiple PDGF ligands in the human body as part of developmental programs in embryogenesis and continuing through adulthood Any therapies with soluble receptor therefore come with serious efficacy and safety concerns, especially for the treatment of congenital HCMV Soluble virus receptors that are orthogonal to human biology might resolve these concerns This engineering problem is solved by deep mutational scanning on the D2-D3 domains of PDGFRα to identify variants that maintain interactions with the HCMV glycoprotein trimer in the presence of competing PDGF ligands Competition by PDGFs is conformation-dependent, whereas HCMV trimer binding is independent of proper D2-D3 conformation, and many mutations at the receptor-PDGF interface are suitable for functionally separating trimer from PDGF interactions Purified soluble PDGFRα carrying a targeted mutation succeeded in displaying wild type affinity for HCMV trimer with a simultaneous loss of PDGF binding, and neutralizes trimer-only and trimer/pentamer-expressing HCMV strains infecting fibroblasts or epithelial cells Overall, this work makes important progress in the realization of soluble HCMV receptors for clinical application

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An engineered decoy receptor for SARS-CoV-2 broadly binds protein S sequence variants

TL;DR: It is concluded that resistance to engineered decoys will be rare and that decoys may be active against future outbreaks of SARS-associated betacoronaviruses.
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Structures of HCMV Trimer reveal the basis for receptor recognition and cell entry.

TL;DR: In this article, the authors determine three cryogenic electron microscopy (cryo-EM) structures of the trimer and the details of its interactions with four binding partners: the receptor proteins PDGFRα and TGFβR3 as well as two broadly neutralizing antibodies.
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ACE2-based decoy receptors for SARS coronavirus 2.

TL;DR: In this paper, the host entry receptor angiotensin-converting enzyme 2 (ACE2) is used as a soluble decoy that broadly blocks SARS-associated coronaviruses with limited potential for viral escape.
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Deep mutagenesis in the study of COVID-19: a technical overview for the proteomics community.

TL;DR: A deep mutational scan of ACE2 expressed on human cells identified mutations that increase S affinity and guided the engineering of a potent and broad soluble receptor decoy that may act as a source for drug resistance and antigenic drift.
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Deep Mutational Scanning of Viral Glycoproteins and Their Host Receptors

TL;DR: Deep mutagenesis is a powerful tool for understanding the sequence diversity available to viruses for adaptation in a laboratory setting as discussed by the authors, which generally involves tracking an in vitro selection of protein sequence variants with deep sequencing to map mutational effects based on changes in sequence abundance.
References
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Journal ArticleDOI

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

TL;DR: The Gene Expression Omnibus (GEO) project was initiated in response to the growing demand for a public repository for high-throughput gene expression data and provides a flexible and open design that facilitates submission, storage and retrieval of heterogeneous data sets from high-power gene expression and genomic hybridization experiments.
Journal ArticleDOI

Role of platelet-derived growth factors in physiology and medicine.

TL;DR: Basic aspects of the PDGF ligands and receptors, their developmental and pathological functions, principles of their pharmacological inhibition, and results using PDGF pathway-inhibitory or stimulatory drugs in preclinical and clinical contexts are reviewed.
Journal ArticleDOI

Engineering and characterization of a superfolder green fluorescent protein.

TL;DR: A robustly folded version of GFP is generated, called 'superfolder' GFP, that folds well even when fused to poorly folded polypeptides, and shows improved tolerance of circular permutation, greater resistance to chemical denaturants and improved folding kinetics.
Journal ArticleDOI

IgG subclasses and allotypes: from structure to effector functions.

TL;DR: IgG-polymorphisms and post-translational modification of the antibodies in the form of glycosylation, affect IgG-function will be the focus of the current review.
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