Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
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"Enrichr: a comprehensive gene set e..." refers background or methods in this paper
...To extract gene sets from gene expression data deposited in the GEO (29), we established a crowdsourcing microtask project that asks participants to extract gene sets from GEO for the following categories: (1) single-gene perturbations in mammalian cells; (2) comparison of diseased versus normal tissues; (3) single-drug perturbations in mammalian cells; (4) perturbations applied to MCF7 cells; (5) comparison between young and old mammalian tissues; (6) endogenous ligand perturbations of mammalian cells; and (7) comparison of before and after pathogen infection of human cells....
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...The Gene Ontology (GO), which was first published in the year 2000 (1), introduced the concept of associating a collection of genes with a functional biological term in a systematic way....
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"Enrichr: a comprehensive gene set e..." refers methods in this paper
...Subsequently, improved enrichment analysis algorithms (7,8) and enrichment analysis tools (9–13) emerged....
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...To extract gene sets from gene expression data deposited in the GEO (29), we established a crowdsourcing microtask project that asks participants to extract gene sets from GEO for the following categories: (1) single-gene perturbations in mammalian cells; (2) comparison of diseased versus normal tissues; (3) single-drug perturbations in mammalian cells; (4) perturbations applied to MCF7 cells; (5) comparison between young and old mammalian tissues; (6) endogenous ligand perturbations of mammalian cells; and (7) comparison of before and after pathogen infection of human cells....
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"Enrichr: a comprehensive gene set e..." refers methods in this paper
...User interface pros and cons There are many other gene set enrichment analysis tools that could be compared with Enrichr; for example, some leading tools are Fidea (39), DAVID (13), WebGestalt (12), g:Profiler (12) and GSEA (40)....
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...There are many other gene set enrichment analysis tools that could be compared with Enrichr; for example, some leading tools are Fidea (39), DAVID (13), WebGestalt (12), g:Profiler (12) and GSEA (40)....
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