ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time.
Citations
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Cites background from "ESPRIT-Tree: hierarchical clusterin..."
...Pour réduire tout de même les temps d'analyse, ESPRIT a été remplacé par son successeur ESPRIT-Tree [Cai & Sun, 2011], allégeant les temps de calcul en promettant une qualité de résultats d'analyse similaire....
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...Les auteurs d'ESPRIT ont développé une approche intermédiaire entre clustering hiérarchique et clustering par centroïdes, qui est ESPRIT-Tree [Cai & Sun 2011]....
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2 citations
Cites methods from "ESPRIT-Tree: hierarchical clusterin..."
...1) Preprocessing of ICoMM Data: We employ ESPIRITTree [8] to cluster sequences into OTUs at various distance levels....
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1 citations
Cites background from "ESPRIT-Tree: hierarchical clusterin..."
...In a second approach, developers have compared the time and memory required to 27 cluster sequences in a dataset (6, 13, 17, 18)....
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References
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"ESPRIT-Tree: hierarchical clusterin..." refers background in this paper
...In addition to microbial diversity estimation, there is currently increased interest in applying taxonomyindependent analysis to analyze millions of sequences for comparative microbial community analysis (11,12)....
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...05 level 241 (7) 268 (6) 362 (11) 314 (9) peak NMI-species 402 (9) 400 (9) 590 (13) 314 (9) peak NMI-genus 190 (5) 176 (7) 216 (6) 243 (7)...
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