ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time.
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Cites methods from "ESPRIT-Tree: hierarchical clusterin..."
...…approaches: UCLUST version 4.2.40 (Edgar, 2010), mothur clustering version 1.6.0 (Schloss et al., 2009), ESPRIT-Tree beta release September 2011 (Cai and Sun, 2011), CD-HIT version 3.1.1 (Li and Godzik, 2006) and QIIME BLAST clustering (QIIME 1.3.0 and BLAST 2.2.22) (Altschul et al., 1990)....
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..., 2009), ESPRIT-Tree beta release September 2011 (Cai and Sun, 2011), CD-HIT version 3....
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"ESPRIT-Tree: hierarchical clusterin..." refers background in this paper
...In addition to microbial diversity estimation, there is currently increased interest in applying taxonomyindependent analysis to analyze millions of sequences for comparative microbial community analysis (11,12)....
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...05 level 241 (7) 268 (6) 362 (11) 314 (9) peak NMI-species 402 (9) 400 (9) 590 (13) 314 (9) peak NMI-genus 190 (5) 176 (7) 216 (6) 243 (7)...
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