ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time.
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Cites background from "ESPRIT-Tree: hierarchical clusterin..."
...In a second approach, developers have compared the time and memory required to cluster sequences in a data set (6, 13, 17, 18)....
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Cites methods from "ESPRIT-Tree: hierarchical clusterin..."
...Briefly, the ITS1 sequences downloaded from GenBank were pre-clustered at 2% difference (Huse et al. 2010) and then grouped into Sp-eq OTUs (at a distance cutoff of 0.05) using ESPRIT-TREE (an alignment-free OTU binning method; Cai and Sun 2011)....
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"ESPRIT-Tree: hierarchical clusterin..." refers background in this paper
...In addition to microbial diversity estimation, there is currently increased interest in applying taxonomyindependent analysis to analyze millions of sequences for comparative microbial community analysis (11,12)....
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...05 level 241 (7) 268 (6) 362 (11) 314 (9) peak NMI-species 402 (9) 400 (9) 590 (13) 314 (9) peak NMI-genus 190 (5) 176 (7) 216 (6) 243 (7)...
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