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Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders

TL;DR: High genetic correlations were found between extraversion and attention-deficit–hyperactivity disorder (ADHD) and between openness and schizophrenia and bipolar disorder, and between neuroticism and openness to experience were clustered with the disorders.
Abstract: Personality is influenced by genetic and environmental factors and associated with mental health. However, the underlying genetic determinants are largely unknown. We identified six genetic loci, including five novel loci, significantly associated with personality traits in a meta-analysis of genome-wide association studies (N = 123,132-260,861). Of these genome-wide significant loci, extraversion was associated with variants in WSCD2 and near PCDH15, and neuroticism with variants on chromosome 8p23.1 and in L3MBTL2. We performed a principal component analysis to extract major dimensions underlying genetic variations among five personality traits and six psychiatric disorders (N = 5,422-18,759). The first genetic dimension separated personality traits and psychiatric disorders, except that neuroticism and openness to experience were clustered with the disorders. High genetic correlations were found between extraversion and attention-deficit-hyperactivity disorder (ADHD) and between openness and schizophrenia and bipolar disorder. The second genetic dimension was closely aligned with extraversion-introversion and grouped neuroticism with internalizing psychopathology (e.g., depression or anxiety).

Summary (1 min read)

Introduction

  • UC San Diego UC San Diego Previously Published Works Title Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.
  • It models personality according to five broad domains4.
  • All six SNPs discovered here reside in loci for which genome-wide significant associations with other phenotypes have been reported (US National Human Genome Research Institute GWAS catalog).
  • The authors analyses did not show consistent evidence for these SNPs influencing personality traits through gene expression in the brain, but cautious interpretation is warranted owing to the small eQTL sample (N = 134).

XKR6

  • The opposite signals might be attributable to negative phenotypic association between neuroticism and extraversion.
  • A pairwise genetic correlation matrix (11 × 11) revealed several significant correlations (Fig. 3a and Supplementary Table 4).
  • These findings provide additional support for shared genetic influences between personality traits and psychiatric disorders3,21,23 and for the idea that personality traits and psychiatric disorders exist on a continuum in phenotypic and genomic space5,11.
  • The overall effort promises to have great relevance to public health.

MeTHODs

  • Methods, including statements of data availability and any associated accession codes and references, are available in the online version of the paper.
  • Any Supplementary Information and Source Data files are available in the online version of the paper, also known as Note.

ACKNOWLEDGMENTS

  • The authors thank the customers, research participants and employees of 23andMe for making this work possible.
  • The FRIPRO Mobility grant scheme is cofunded by the European Union’s Seventh Framework Programme for research, technological development and demonstration under Marie Curie grant agreement no.
  • D.J.S. is supported by a Lister Institute Prize fellowship.
  • The research leading to deCODE results was supported in part by the US National Institutes of Health NIDA (R01-DA017932 and R01-DA034076) and the Innovative Medicines Initiative Joint Undertaking under grant agreement no.

AUTHOR CONTRIBUTIONS

  • M.-T.L. and C.-H.C. analyzed data and wrote the manuscript.
  • All authors commented on and approved the manuscript.

COMPETING FINANCIAL INTERESTS

  • The authors declare competing financial interests: details are available in the online version of the paper.
  • Vukasović , T. & Bratko, D. Heritability of personality: a meta-analysis of behavior genetic studies.
  • Meta-analysis of genome-wide association studies for neuroticism, and the polygenic association with major depressive disorder.
  • Biological insights from 108 schizophrenia-associated genetic loci.

ONLINe MeTHODs

  • The GWAS summary statistics were obtained from a subset of 23andMe participants.
  • The authors focused on autosomal SNPs, which are available for 23andMe, GPC and UK Biobank samples.
  • The authors made QQ plots with GWAS summary statistics of the 23andMe sample.
  • Cross-Disorder Group of the Psychiatric Genomics Consortium.

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UC San Diego
UC San Diego Previously Published Works
Title
Genome-wide analyses for personality traits identify six genomic loci and show
correlations with psychiatric disorders.
Permalink
https://escholarship.org/uc/item/5td9g058
Journal
Nature genetics, 49(1)
ISSN
1061-4036
Authors
Lo, Min-Tzu
Hinds, David A
Tung, Joyce Y
et al.
Publication Date
2017
DOI
10.1038/ng.3736
Peer reviewed
eScholarship.org Powered by the California Digital Library
University of California

152 VOLUME 49 | NUMBER 1 | JANUARY 2017 Nature GeNetics
Personality is influenced by genetic and environmental factors
1
and associated with mental health. However, the underlying
genetic determinants are largely unknown. We identified six
genetic loci, including five novel loci
2,3
, significantly associated
with personality traits in a meta-analysis of genome-wide
association studies (N = 123,132–260,861). Of these genome-
wide significant loci, extraversion was associated with variants
in WSCD2 and near PCDH15, and neuroticism with variants
on chromosome 8p23.1 and in L3MBTL2. We performed a
principal component analysis to extract major dimensions
underlying genetic variations among five personality traits
and six psychiatric disorders (N = 5,422–18,759). The first
genetic dimension separated personality traits and psychiatric
disorders, except that neuroticism and openness to experience
were clustered with the disorders. High genetic correlations
were found between extraversion and attention-deficit–
hyperactivity disorder (ADHD) and between openness and
schizophrenia and bipolar disorder. The second genetic
dimension was closely aligned with extraversion–introversion
and grouped neuroticism with internalizing psychopathology
(e.g., depression or anxiety).
The five-factor model (FFM) of personality, also known as the ‘Big Five,
is commonly used to measure individual differences in personality. It
models personality according to five broad domains
4
. Extraversion
(versus introversion) reflects talkativeness, assertiveness and a high
activity level. Neuroticism (versus emotional stability) reflects negative
affect, such as anxiety and depression. Agreeableness (versus antago-
nism) measures cooperativeness and compassion. Conscientiousness
(versus undependability) indicates diligence and self-discipline.
Openness to experience (versus being closed to experience)
captures intellectual curiosity and creativity
4,5
. Personality pheno-
types, measured by various questionnaires, are represented by
continuous quantitative scores for each of the five traits
4
.
A meta-analysis of twin and family studies found that approxi-
mately 40% of the variance in personality could be attributed to genetic
factors
1
. Genome-wide association studies (GWAS) have discovered
several variants associated with FFM traits
6–8
. Neuroticism was reported
to be associated with an intronic variant in MAGI1 (P = 9.26 × 10
−9
,
N = 63,661)
7
, conscientiousness with an intronic variant in KATNAL2
(P = 4.9 × 10
−8
, N = 17,375)
6
, and openness with variants near RASA1
(P = 2.8 × 10
−8
, N = 17,375)
6
and PTPRD (P = 1.67 × 10
−8
, N = 1,089)
8
.
Additionally, recent UK Biobank studies (N = 106,716–170,908)
yielded several SNPs associated with neuroticism
2,3
.
Information collected by the consumer genomics company
23andMe contains well-phenotyped data on personality, as all par-
ticipants were evaluated with the same personality inventory (Online
Methods). Thus, the 23andMe data offer an opportunity to identify
additional genetic variants. We performed a meta-analysis based on
GWAS summary statistics to identify genetic variants associated with
FFM traits. We included participants with European ancestry from
23andMe (N = 59,225) and two samples (GPC-1 and GPC-2) from the
Genetics of Personality Consortium (GPC)
6,7
. GPC-1 (N = 17,375)
6
contains data on agreeableness, conscientiousness and openness,
whereas GPC-2 (N = 63,661)
7
contains information on extraversion
and neuroticism.
Summary statistics of GWAS from 23andMe (Supplementary
Data Sets 15) were combined with the two GPC samples separately,
yielding totals of 76,600 and 122,886 subjects for the discovery–stage
1 sample. Eight linkage disequilibrium (LD)-independent SNPs (LD
r
2
< 0.05) exceeded genome-wide significance (P < 5 × 10
−8
) in the
discovery meta-analysis (Table 1 and Fig. 1).
Genome-wide analyses for personality traits identify
six genomic loci and show correlations with psychiatric
disorders
Min-Tzu Lo
1
, David A Hinds
2
, Joyce Y Tung
2
, Carol Franz
3
, Chun-Chieh Fan
1,4
, Yunpeng Wang
5–7
, Olav B Smeland
6,7
,
Andrew Schork
1,4
, Dominic Holland
5
, Karolina Kauppi
1,8
, Nilotpal Sanyal
1
, Valentina Escott-Price
9
,
Daniel J Smith
10
, Michael O’Donovan
9
, Hreinn Stefansson
11
, Gyda Bjornsdottir
11
, Thorgeir E Thorgeirsson
11
,
Kari Stefansson
11
, Linda K McEvoy
1
, Anders M Dale
1,3,5
, Ole A Andreassen
6,7
& Chi-Hua Chen
1
1
Department of Radiology, University of California, San Diego, La Jolla, California, USA.
2
23andMe, Inc., Mountain View, California, USA.
3
Department of Psychiatry,
University of California, San Diego, La Jolla, California, USA.
4
Department of Cognitive Science, University of California, San Diego, La Jolla, California, USA.
5
Department of Neurosciences, University of California, San Diego, La Jolla, California, USA.
6
NORMENT, KG Jebsen Centre for Psychosis Research, Institute of
Clinical Medicine, University of Oslo, Oslo, Norway.
7
Division of Mental Health and Addiction, Oslo University Hospital, Oslo, Norway.
8
Department of Radiation
Sciences, Umea University, Sweden.
9
MRC Centre for Neuropsychiatric Genetics and Genomics, Cardiff University, Cardiff, UK.
10
Institute of Health and Wellbeing,
University of Glasgow, Glasgow, UK.
11
deCODE Genetics/Amgen, Reykjavik, Iceland. Correspondence should be addressed to C.-H.C. (chc101@ucsd.edu).
Received 22 July; accepted 2 November; published online 5 December 2016; doi:10.1038/ng.3736
L E T T E R S
© 2017 Nature America, Inc., part of Springer Nature. All rights reserved.

Nature GeNetics VOLUME 49 | NUMBER 1 | JANUARY 2017 153
To evaluate the consistency of association signals between 23andMe
and GPC samples, we conducted genome-wide polygenic analyses
using LD Score regression to examine genetic correlations (r
g
) (ref. 9)
of personality traits between the two samples. The estimated r
g
values were highly significant (r
g
= 0.86–0.96), suggesting that genetic
effects are consistent and replicable between the samples at the poly-
genic level (Supplementary Fig. 1) and that a considerable number of
SNPs below the GWAS significance threshold contain trait-associated
genetic effects.
To assess replicability of the eight significant SNPs identified in
the discovery–stage 1 sample, we obtained their summary statistics
from three independent samples, including an independent 23andMe
replication sample, UK Biobank cohort (neuroticism only) and
an Icelandic sample from deCODE Genetics (Online Methods and
Table 1). In the final combined meta-analysis, six SNPs remained
GWAS significant. The other two fell just below GWAS significance
but had consistent direction of effects in all samples, suggesting that
these may be significant in larger samples. Overall, the directions
of effects were consistent for all eight SNPs between the discovery
and replication tests, except two SNPs in the smaller (N = 7,137)
deCODE sample.
The strongest associations were detected for neuroticism within a
subregion of 8p23.1, which spans ~4 Mb (chr. 8: 8091701–11835712)
with highly correlated SNPs in one LD block (Fig. 2a). The 8p23.1
region comprises genes related to innate immunity and the nervous
system and is considered as a potential hub for cancer and develop-
mental neuropsychiatric disorders
10
. Our conditional analysis indi-
cated the presence of multiple associations (conditional P ~ 10
−7
)
independent of the top SNP within the 8p23.1 locus, but these were
not GWAS significant.
The UK Biobank studies also identified multiple associations
with neuroticism in 8p23.1 (refs. 2,3), which were attributed to an
inversion polymorphism
2
. Our association signals reside in the
same inversion region, with an LD of r
2
= 0.35 (LDlink) between
the lead SNP found here and that found in the UK Biobank study
3
.
Additionally, we identified an intronic variant of MTMR9 within
8p23.1 that was associated with extraversion and inversely associated
with neuroticism (Fig. 2b). Together, these findings provide converg-
ing evidence for the association of 8p23.1 with personality.
For extraversion, we found a significant locus on 12q23.3 within
WSCD2. This locus has been implicated in a GWAS of temperament
in bipolar disorder
11
and in a linkage analysis
12
, suggesting that 12q
harbors important alleles for temperament and personality. Another
SNP significantly associated with extraversion is near PCDH15,
which encodes a member of the cadherin superfamily important for
calcium-dependent cell–cell adhesion.
All six SNPs discovered here reside in loci for which genome-wide
significant associations with other phenotypes have been reported
(US National Human Genome Research Institute GWAS catalog). For
example, we found a variant associated with neuroticism in L3MBTL2,
a gene reported to be associated with schizophrenia
13
. Etiologically,
neuroticism has been associated with schizophrenia risk
14
. Further,
MTMR9, in which we found a variant associated with extraversion,
has been related to response to antipsychotic medications
15
. The SNP
associated with conscientiousness in the discovery sample, though not
significant in the final meta-analysis, was located in a locus linked to
educational attainment
16
, and high conscientiousness was found to
correlate positively with academic performance
17
.
These six SNPs were significantly associated with gene expression,
and all are listed as expression quantitative trait loci (eQTL) for brain
tissues (Supplementary Table 1). We performed a Bayesian test
18
Table 1 LD-independent genetic variants significantly associated with personality traits
Discovery–stage 1 Replication–stage 2
Combined analysis
SNP Chr.
Closest
gene (region)
A1/
A2 Frq.
23andMe
(N = ~59,200)
GPC (N = 17,375 and
63,661)
b
Combined
analysis
23andMe replication
(N = ~39,500)
deCODE
(N = ~7,100)
UK Biobank
(N = 91,370)
β
SE P
β
SE P P N
β
SE P
β
SE P
β
SE P P N R
2
(%)
Conscientiousness
rs3814424 5q LINC00461
a
T/C 0.17 –0.289 0.050 9.75 ×
10
−9
–0.138 0.131 0.294 2.98 ×
10
−8
76,551 –0.051 0.051 0.313 –0.005 0.027 0.855 6.19 ×
10
−7
123,132 0.0202
Extraversion
rs57590327 3p GBE1
(intergenic)
T/G 0.26 0.236 0.054 1.37 ×
10
−5
0.026 0.006 2.03 ×
10
−5
1.61 ×
10
−9
122,886 0.088 0.052 0.091 0.007 0.019 0.713 1.26 ×
10
−9
169,507 0.0217
rs2164273 8p MTMR9
(intron)
G/A 0.39 0.179 0.047 1.14 ×
10
−4
0.024 0.006 4.08 ×
10
−5
1.79 ×
10
−8
122,845 0.093 0.045 0.037 0.021 0.018 0.255 1.61 ×
10
−9
169,466 0.0215
rs6481128 10q PCDH15
(intergenic)
G/A 0.45 0.205 0.046 7.10 ×
10
−6
0.018 0.005 0.0010 4.15 ×
10
−8
122,886 0.154 0.045 5.58 ×
10
−4
–0.011 0.017 0.528 5.44 ×
10
−10
169,507 0.0227
rs1426371 12q WSCD2
(intron)
A/G 0.28 –0.308 0.053 4.65 ×
10
−9
–0.023 0.006 2.56 ×
10
−4
2.09 ×
10
−11
122,886 –0.177 0.051 5.09 ×
10
−4
–0.037 0.021 0.077 9.54 ×
10
−15
169,507 0.0354
rs7498702 16p RBFOX1
(intron)
C/T 0.29 –0.166 0.050 8.94 ×
10
−4
–0.026 0.006 1.17 ×
10
−5
4.73 ×
10
−8
122,886 –0.006 0.048 0.907 –0.005 0.018 0.777 1.89 ×
10
−6
169,507 0.0134
Neuroticism
rs6981523 8p XKR6
(intergenic)
T/C 0.50 0.250 0.042 2.68 ×
10
−9
0.022 0.006 1.01 ×
10
−4
4.25 ×
10
−12
122,867 0.138 0.042 1.05 ×
10
−3
0.032 0.018 0.070 0.098 0.015 1.04 ×
10
−10
3.17 ×
10
−24
260,861 0.0395
rs9611519 22q L3MBTL2
(exon) CHADL
(intron)
T/C 0.31 0.235 0.046 4.05 ×
10
−7
0.020 0.007 0.003 1.87 ×
10
−8
122,867 0.002 0.047 0.966 –0.002 0.023 0.931 0.053
c
0.017
c
0.0015
c
9.16 ×
10
−9
260,861 0.0127
A1, effect allele; A2, noneffect allele; frq., allele frequency of A1;
β
, linear regression association coefficient; SE, standard error; N, sample size.
β
and SE may have varying scales in different cohorts; thus sample-based meta-analyses were used.
a
SNP in non-protein coding region.
b
The sample sizes of GPC1 and GPC2 are 17,375 and 63,661, respectively.
c
Owing to absence of rs9611519 in the UK Biobank data, a proxy SNP (rs2273085, LD r
2
= 0.99) was used.
L E T T E R S
© 2017 Nature America, Inc., part of Springer Nature. All rights reserved.

154 VOLUME 49 | NUMBER 1 | JANUARY 2017 Nature GeNetics
L E T T E R S
to examine whether GWAS signals colocalize with eQTL. COLOC-
estimated posterior probabilities
18
(Online Methods) indicated
that one SNP-associated locus (rs57590327) and its correspond-
ing eQTL (Supplementary Table 1) were probably attributable to a
common causal variant (posterior probability = 0.76). Another SNP
(rs216273) showed evidence of independence with eQTL (posterior
probability = 0.75). For the rest of the SNPs, the posterior probability
ranged between 0 and 0.45, failing to support any of the specified
hypotheses. Our analyses did not show consistent evidence for these
SNPs influencing personality traits through gene expression in the
brain, but cautious interpretation is warranted owing to the small
eQTL sample (N = 134).
Beyond identifying single genetic variants that each account for
very little phenotypic variance, we estimated SNP-based heritability
of the traits. All heritability estimates were significant in the 23andMe
discovery sample, with the largest estimate for extraversion (H
2
= 0.18)
(Supplementary Table 2). These findings extend those from a previ-
ous heritability analysis of FFM traits (N = 5,011), in which SNP-based
heritability estimates were significant for neuroticism and openness
19
.
As expected, SNP-based heritability estimates were lower than those
reported in family studies
1
.
Relationships among personality traits are also of interest. Although
the FFM traits were derived through factor analysis and were thus
orthogonal in the original findings, most studies observe some degree
of phenotypic correlation between traits
19
. Using 23andMe data,
we found that neuroticism was inversely correlated with the other
personality traits, whereas agreeableness, conscientiousness, extra-
version and openness were all positively correlated; all phenotypic
correlations were highly significant except that between openness
and conscientiousness (Supplementary Table 3). Genetic correlation
8
7
6
5
4
3
2
Chromosome
Extraversion
–log
10
(P)
Agreeableness
Conscientiousness
rs3814424
9
8
7
6
5
4
3
2
–log
10
(P)
Neuroticism
rs6981523
rs9611519
12
10
8
6
4
2
rs57590327
rs2164273
rs6481128
rs1426371
rs7498702
12
10
8
6
4
2
8
7
6
5
3
4
2
Openness
–log
10
(P)–log
10
(P)–log
10
(P)
1
2 3 4
5
6 7 8
9 10 11 12
13 211917161514
Chromosome
1 2 3 4 5
6
7 8 9 10 11 12
13
2119
17161514
Chromosome
1
2
3 4 5 6 7 8 9 10 11 12
13
21
1917161514
Chromosome
1
2
3
4
5 6 7 8 9 10 11 12
13
2119
17161514
Chromosome
1 2 3
4
5
6
7 8 9 10 11 12 13 211917161514
Figure 1 Manhattan plots for personality traits in the combined sample
of 23andMe and GPC data (discovery–stage1 sample). Sample sizes
were as follows: agreeableness, N = 76,551; conscientiousness,
N = 76,551; extraversion, N = 122,886; neuroticism, N = 122,867;
openness, N = 76,581. Number of SNPs: agreeableness, N = 2,165,398;
conscientiousness, N = 2,166,809; extraversion, N = 6,343,667;
neuroticism, N = 6,337,541; openness, N = 2,167,320.
12
10
8
6
4
2
0
–log
10
(P)
10
8
6
4
2
0
–log
10
(P)
rs6981523
rs2164273
MSRA
PRSS55
SOX7
PINX1
LINCR-0001
RP1L1
C8orf74
XKR6
MIR598
MTMR9
BLK
SLC35G5
LINC00208
GATA4
DEFB136
DEFB130
DEFB135
DEFB134
FDFT1
C80rf49
NEIL2
CTSB
FAM66D
TDH
C8orf12
FAM167A
MIR1322
10 10.5 11 11.5 12
Position on chromosome 8 (Mb)
0.8
0.6
0.4
0.2
r
2
a
b
Figure 2 Regional association plot. (a,b) Distribution of −log
10
(P) of SNPs
on chr. 8p of the significant SNPs for neuroticism (a) and extraversion
(b, top) in the combined discovery analysis. The most significant SNPs
(rs6981523 and rs2164273) are shown in purple; otherwise, the colors
of the circles denote their correlations (LD r
2
) with the top SNP. These
SNPs (LD r
2
= 0.5 in LDlink) have opposite β signs in GWAS results for
neuroticism and extraversion. The opposite signals might be attributable
to negative phenotypic association between neuroticism and extraversion.
Gene symbols and locations within the region derived from UCSC Genome
Browser human hg19 assembly are shown (b, bottom). Regional plots
with detailed annotation information for significant SNPs are also
shown in Supplementary Figure 4.
© 2017 Nature America, Inc., part of Springer Nature. All rights reserved.

Nature GeNetics VOLUME 49 | NUMBER 1 | JANUARY 2017 155
L E T T E R S
patterns were congruent with phenotypic correlations, but the associa-
tions were more apparent in genetic structure, which reflected shared
genetic factors contributing to the correlations (Fig. 3a).
A notable feature of personality is its link with a wide range
of social, mental and physical health outcomes
5
. High levels of
neuroticism, extraversion and openness have been associated with
bipolar disorder
20
, and high neuroticism has been associated with
major depression and anxiety
21
. Low agreeableness has been asso-
ciated with narcissism, Machiavellianism and psychopathy
22
. In
addition to phenotypic relationships, twin and GWAS studies have
demonstrated genetic correlations between personality traits and
psychiatric disorders
3,21,23
, though most focus on neuroticism
(Supplementary Note).
We thus sought to quantify the genetic correlations between the five
personality traits and six psychiatric disorders from the Psychiatric
Genomics Consortium (PGC): schizophrenia (N = 17,115), bipolar
disorder (N = 16,731), major depressive disorder (N = 18,759), ADHD
(N = 5,422) and autism spectrum disorder (N = 10,263), and from
the Genetic Consortium for Anorexia Nervosa (N = 17,767) (Online
Methods and Supplementary Table 2). A pairwise genetic correlation
matrix (11 × 11) revealed several significant correlations (Fig. 3a and
Supplementary Table 4). For example, neuroticism was highly corre-
lated with depression, and extraversion with ADHD. To complement
genetic correlation estimation via LD Score regression
9
, we compared
the pattern of GWAS results by assessing whether signs of genetic
effects were concordant between the top associations among these
traits and disorders. The results of the sign tests of directional effects
closely matched the genetic correlations (Supplementary Fig. 2).
Given the moderate and high genetic correlations, we subsequently
conducted a principal component analysis (PCA) to extract principal
components of genetic variation (Fig. 3b). We projected all pheno-
types onto a two-dimensional space spanned by the top two principal
components (PC1 and PC2) of genetic variation to summarize the
genetic relationships between personality traits and psychiatric disor-
ders. The analysis integrates genomic information with traditionally
defined phenotypes to better understand basic dimensions of the full
range of human behavior, from typical to pathological, in line with the
research strategy of the Research Domain Criteria (RDoC)
24
.
Our results indicated that openness, bipolar disorder and schizo-
phrenia cluster in the first quadrant (Fig. 3b). Notably, all three share
phenotypic commonality in that they have been linked to height-
ened creativity and dopamine activity
25,26
. Most personality traits
(conscientiousness, agreeableness and extraversion) clustered in the
second quadrant. Neuroticism and depression were in the fourth
quadrant. Autism and anorexia nervosa were captured by factors in
higher dimensions and have relatively low loadings on the first two
components (as indicated by short arrows on these two dimensions
in Fig. 3b). Notably, ADHD showed a high genetic correlation with
extraversion and low correlations with other psychiatric disorders
(except bipolar disorder), as also shown in hierarchical clustering
analysis, in which ADHD clustered with personality traits rather than
psychiatric disorders (Supplementary Fig. 3). This may indicate that
ADHD, or some ADHD subtypes, represent a variant of extraversion.
Of note, our ADHD data were from individuals ranging in age from 5
to 19 years old. Phenotypically, positive emotionality has been linked
with a subgroup of children with ADHD
27
. Future genetic studies con-
sidering ADHD heterogeneity (e.g., subtypes and differences between
child and adult forms) may help characterize its diverse etiologies and
relationships with personality traits.
Overall, we observed a systematic pattern, with all psychiatric
disorders showing positive loadings on PC1, and agreeableness and
conscientiousness with negative loadings. A combination of low agree-
ableness and low conscientiousness is thought to reflect Eysenck’s
psychoticism trait
4
. PC2 was closely aligned with the extraversion
introversion axis. Extraversion has been associated with externalizing
traits and behavioral activation, and introversion, with internalizing
traits and behavioral inhibition
28,29
. Internalizing traits (e.g., neuroti-
cism, depression, anxiety and withdrawal)
21
have negative loadings
on PC2. Externalizing traits are predicted by high extraversion, low
agreeableness and low conscientiousness
29
.
These findings provide additional support for shared genetic influ-
ences between personality traits and psychiatric disorders
3,21,23
and
for the idea that personality traits and psychiatric disorders exist on
a continuum in phenotypic and genomic space
5,11
. Maladaptive or
extreme variants of personality may contribute to the persistence of,
or vulnerability to, psychiatric disorders and comorbidity
5,11,21,23
.
Further genomic research in which categorical disease entities are
viewed as variants of quantitative dimensions in a polygenic frame-
work may help elucidate this issue
30
.
Agreeableness
Conscientiousness
Extraversion
Neuroticism
Openness to experience
Schizophrenia
Bipolar disorder
Major depression
ADHD
Autism spectrum disorder
Anorexia nervosa
Genetic
correlation
1.0
0.5
0
–0.5
–1.0
1.00
0.23**
0.23** 0.22** –0.40** 0.11 –0.03 0.07 –0.29* 0.08 –0.24* –0.03
1.00 0.15* –0.18* –0.19* –0.13* –0.18* –0.28* –0.10 –0.21* 0.01
–0.05–0.040.30*0.020.18*–0.010.34**–0.35**1.000.15*0.22**
–0.40** –0.18* –0.35** 1.00 –0.15* 0.14 –0.01 0.56** 0.06 0.10 0.15**
0.090.12
0.11 0.21**
0.19
–0.03
0.28*
0.47**
0.52**
1.00
–0.12
0.12
0.15 0.07 0.16*
0.170.12–0.12
1.00
–0.10
–0.10 –0.06
0.061.00
0.06 1.00
10 11
0.34**0.36**1.00–0.15*0.34**–0.19*0.11
–0.03 –0.13* –0.01 0.14 0.36** 1.00 0.65**
0.07 –0.18* 0.18* –0.01 0.34** 0.65** 1.00
0.52**0.47**0.28*0.56**0.02–0.28*–0.29*
0.08 –0.10 0.30* 0.06 0.19 –0.03 0.15
–0.24* –0.21* –0.04 0.10 0.12 0.11 0.07
–0.060.170.16*
0.21**
0.090.15**–0.050.01–0.03
987654321
0.8
0.6
0.4
0.2
0
–0.2
–0.4
–0.6
–0.8
Principal component 2 (19% of total genetic variance)
–0.9
–0.7
–0.5
–0.3 –0.1 0.1
0.3 0.5 0.7
0.9
Principal component 1 (25% of total genetic variance)
ADHD
Bipolar disorder
Schizophrenia
Anorexia nervosa
Autism
Major
depression
Extraversion
Agreeableness
Openness
Conscientiousness
Neuroticism
II I
III
IV
a
b
Figure 3 Genetic correlations between personality traits (23andMe sample)
and psychiatric disorders. (a) Heat map illustrating genetic correlations
between phenotypes. The values in the color squares correspond to genetic
correlations. Asterisks denote genetic correlations significantly different
from 0: *P < 0.05; **P < 0.00091 (Bonferroni correction threshold).
(b) Loading plot of personality traits and psychiatric disorders on the first
two principal components derived from the genetic correlation matrix
in a. A small angle between arrows indicates a high correlation between
variables, and arrows pointing in opposite directions indicate a negative
correlation in the space of the two principal components.
© 2017 Nature America, Inc., part of Springer Nature. All rights reserved.

Citations
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Journal ArticleDOI
Mary F. Feitosa1, Aldi T. Kraja1, Daniel I. Chasman2, Yun J. Sung1  +296 moreInstitutions (86)
18 Jun 2018-PLOS ONE
TL;DR: In insights into the role of alcohol consumption in the genetic architecture of hypertension, a large two-stage investigation incorporating joint testing of main genetic effects and single nucleotide variant (SNV)-alcohol consumption interactions is conducted.
Abstract: Heavy alcohol consumption is an established risk factor for hypertension; the mechanism by which alcohol consumption impact blood pressure (BP) regulation remains unknown. We hypothesized that a genome-wide association study accounting for gene-alcohol consumption interaction for BP might identify additional BP loci and contribute to the understanding of alcohol-related BP regulation. We conducted a large two-stage investigation incorporating joint testing of main genetic effects and single nucleotide variant (SNV)-alcohol consumption interactions. In Stage 1, genome-wide discovery meta-analyses in ≈131K individuals across several ancestry groups yielded 3,514 SNVs (245 loci) with suggestive evidence of association (P < 1.0 x 10-5). In Stage 2, these SNVs were tested for independent external replication in ≈440K individuals across multiple ancestries. We identified and replicated (at Bonferroni correction threshold) five novel BP loci (380 SNVs in 21 genes) and 49 previously reported BP loci (2,159 SNVs in 109 genes) in European ancestry, and in multi-ancestry meta-analyses (P < 5.0 x 10-8). For African ancestry samples, we detected 18 potentially novel BP loci (P < 5.0 x 10-8) in Stage 1 that warrant further replication. Additionally, correlated meta-analysis identified eight novel BP loci (11 genes). Several genes in these loci (e.g., PINX1, GATA4, BLK, FTO and GABBR2) have been previously reported to be associated with alcohol consumption. These findings provide insights into the role of alcohol consumption in the genetic architecture of hypertension.

1,218 citations

Journal ArticleDOI
TL;DR: It is shown that neuroticism’s genetic signal partly originates in two genetically distinguishable subclusters13 (‘depressed affect’ and ‘worry’), suggesting distinct causal mechanisms for subtypes of individuals.
Abstract: Neuroticism is an important risk factor for psychiatric traits, including depression1, anxiety2,3, and schizophrenia4-6. At the time of analysis, previous genome-wide association studies7-12 (GWAS) reported 16 genomic loci associated to neuroticism10-12. Here we conducted a large GWAS meta-analysis (n = 449,484) of neuroticism and identified 136 independent genome-wide significant loci (124 new at the time of analysis), which implicate 599 genes. Functional follow-up analyses showed enrichment in several brain regions and involvement of specific cell types, including dopaminergic neuroblasts (P = 3.49 × 10-8), medium spiny neurons (P = 4.23 × 10-8), and serotonergic neurons (P = 1.37 × 10-7). Gene set analyses implicated three specific pathways: neurogenesis (P = 4.43 × 10-9), behavioral response to cocaine processes (P = 1.84 × 10-7), and axon part (P = 5.26 × 10-8). We show that neuroticism's genetic signal partly originates in two genetically distinguishable subclusters13 ('depressed affect' and 'worry'), suggesting distinct causal mechanisms for subtypes of individuals. Mendelian randomization analysis showed unidirectional and bidirectional effects between neuroticism and multiple psychiatric traits. These results enhance neurobiological understanding of neuroticism and provide specific leads for functional follow-up experiments.

492 citations

Journal ArticleDOI
TL;DR: Analysis of 329,000 individuals in the UK Biobank identifies 116 loci associated with neuroticism that are enriched in neuronal genesis and differentiation pathways, and genetic correlations between neuroticism and other mental health traits are elucidated.
Abstract: Neuroticism is a relatively stable personality trait characterized by negative emotionality (for example, worry and guilt)1; heritability estimated from twin studies ranges from 30 to 50%2, and SNP-based heritability ranges from 6 to 15%3–6. Increased neuroticism is associated with poorer mental and physical health7,8, translating to high economic burden9. Genome-wide association studies (GWAS) of neuroticism have identified up to 11 associated genetic loci3,4. Here we report 116 significant independent loci from a GWAS of neuroticism in 329,821 UK Biobank participants; 15 of these loci replicated at P < 0.00045 in an unrelated cohort (N = 122,867). Genetic signals were enriched in neuronal genesis and differentiation pathways, and substantial genetic correlations were found between neuroticism and depressive symptoms (rg = 0.82, standard error (s.e.) = 0.03), major depressive disorder (MDD; rg = 0.69, s.e. = 0.07) and subjective well-being (rg = –0.68, s.e. = 0.03) alongside other mental health traits. These discoveries significantly advance understanding of neuroticism and its association with MDD. Analysis of 329,000 individuals in the UK Biobank identifies 116 loci associated with neuroticism. Genes implicated are enriched in neuronal differentiation pathways, and genetic correlations between neuroticism and other mental health traits are elucidated.

300 citations

Journal ArticleDOI
TL;DR: Treatment interventions intended to reverse neuroadaptations that result in an impaired prefrontal top-down self-regulation that favors compulsive drug-taking against the backdrop of negative emotionality and an enhanced interoceptive awareness of "drug hunger" show promise as therapeutic approaches for addiction.
Abstract: Drug consumption is driven by a drug's pharmacological effects, which are experienced as rewarding, and is influenced by genetic, developmental, and psychosocial factors that mediate drug accessibility, norms, and social support systems or lack thereof. The reinforcing effects of drugs mostly depend on dopamine signaling in the nucleus accumbens, and chronic drug exposure triggers glutamatergic-mediated neuroadaptations in dopamine striato-thalamo-cortical (predominantly in prefrontal cortical regions including orbitofrontal cortex and anterior cingulate cortex) and limbic pathways (amygdala and hippocampus) that, in vulnerable individuals, can result in addiction. In parallel, changes in the extended amygdala result in negative emotional states that perpetuate drug taking as an attempt to temporarily alleviate them. Counterintuitively, in the addicted person, the actual drug consumption is associated with an attenuated dopamine increase in brain reward regions, which might contribute to drug-taking behavior to compensate for the difference between the magnitude of the expected reward triggered by the conditioning to drug cues and the actual experience of it. Combined, these effects result in an enhanced motivation to "seek the drug" (energized by dopamine increases triggered by drug cues) and an impaired prefrontal top-down self-regulation that favors compulsive drug-taking against the backdrop of negative emotionality and an enhanced interoceptive awareness of "drug hunger." Treatment interventions intended to reverse these neuroadaptations show promise as therapeutic approaches for addiction.

272 citations

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TL;DR: This work introduces PLINK, an open-source C/C++ WGAS tool set, and describes the five main domains of function: data management, summary statistics, population stratification, association analysis, and identity-by-descent estimation, which focuses on the estimation and use of identity- by-state and identity/descent information in the context of population-based whole-genome studies.
Abstract: Whole-genome association studies (WGAS) bring new computational, as well as analytic, challenges to researchers. Many existing genetic-analysis tools are not designed to handle such large data sets in a convenient manner and do not necessarily exploit the new opportunities that whole-genome data bring. To address these issues, we developed PLINK, an open-source C/C++ WGAS tool set. With PLINK, large data sets comprising hundreds of thousands of markers genotyped for thousands of individuals can be rapidly manipulated and analyzed in their entirety. As well as providing tools to make the basic analytic steps computationally efficient, PLINK also supports some novel approaches to whole-genome data that take advantage of whole-genome coverage. We introduce PLINK and describe the five main domains of function: data management, summary statistics, population stratification, association analysis, and identity-by-descent estimation. In particular, we focus on the estimation and use of identity-by-state and identity-by-descent information in the context of population-based whole-genome studies. This information can be used to detect and correct for population stratification and to identify extended chromosomal segments that are shared identical by descent between very distantly related individuals. Analysis of the patterns of segmental sharing has the potential to map disease loci that contain multiple rare variants in a population-based linkage analysis.

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TL;DR: Extensions to the method of Pritchard et al. for inferring population structure from multilocus genotype data are described and methods that allow for linkage between loci are developed, which allows identification of subtle population subdivisions that were not detectable using the existing method.
Abstract: We describe extensions to the method of Pritchard et al. for inferring population structure from multilocus genotype data. Most importantly, we develop methods that allow for linkage between loci. The new model accounts for the correlations between linked loci that arise in admixed populations (“admixture linkage disequilibium”). This modification has several advantages, allowing (1) detection of admixture events farther back into the past, (2) inference of the population of origin of chromosomal regions, and (3) more accurate estimates of statistical uncertainty when linked loci are used. It is also of potential use for admixture mapping. In addition, we describe a new prior model for the allele frequencies within each population, which allows identification of subtle population subdivisions that were not detectable using the existing method. We present results applying the new methods to study admixture in African-Americans, recombination in Helicobacter pylori , and drift in populations of Drosophila melanogaster . The methods are implemented in a program, structure , version 2.0, which is available at http://pritch.bsd.uchicago.edu.

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TL;DR: The 1000 Genomes Project aims to provide a deep characterization of human genome sequence variation as a foundation for investigating the relationship between genotype and phenotype as mentioned in this paper, and the results of the pilot phase of the project, designed to develop and compare different strategies for genomewide sequencing with high-throughput platforms.
Abstract: The 1000 Genomes Project aims to provide a deep characterization of human genome sequence variation as a foundation for investigating the relationship between genotype and phenotype. Here we present results of the pilot phase of the project, designed to develop and compare different strategies for genome-wide sequencing with high-throughput platforms. We undertook three projects: low-coverage whole-genome sequencing of 179 individuals from four populations; high-coverage sequencing of two mother-father-child trios; and exon-targeted sequencing of 697 individuals from seven populations. We describe the location, allele frequency and local haplotype structure of approximately 15 million single nucleotide polymorphisms, 1 million short insertions and deletions, and 20,000 structural variants, most of which were previously undescribed. We show that, because we have catalogued the vast majority of common variation, over 95% of the currently accessible variants found in any individual are present in this data set. On average, each person is found to carry approximately 250 to 300 loss-of-function variants in annotated genes and 50 to 100 variants previously implicated in inherited disorders. We demonstrate how these results can be used to inform association and functional studies. From the two trios, we directly estimate the rate of de novo germline base substitution mutations to be approximately 10(-8) per base pair per generation. We explore the data with regard to signatures of natural selection, and identify a marked reduction of genetic variation in the neighbourhood of genes, due to selection at linked sites. These methods and public data will support the next phase of human genetic research.

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Stephan Ripke1, Stephan Ripke2, Benjamin M. Neale1, Benjamin M. Neale2  +351 moreInstitutions (102)
24 Jul 2014-Nature
TL;DR: Associations at DRD2 and several genes involved in glutamatergic neurotransmission highlight molecules of known and potential therapeutic relevance to schizophrenia, and are consistent with leading pathophysiological hypotheses.
Abstract: Schizophrenia is a highly heritable disorder. Genetic risk is conferred by a large number of alleles, including common alleles of small effect that might be detected by genome-wide association studies. Here we report a multi-stage schizophrenia genome-wide association study of up to 36,989 cases and 113,075 controls. We identify 128 independent associations spanning 108 conservatively defined loci that meet genome-wide significance, 83 of which have not been previously reported. Associations were enriched among genes expressed in brain, providing biological plausibility for the findings. Many findings have the potential to provide entirely new insights into aetiology, but associations at DRD2 and several genes involved in glutamatergic neurotransmission highlight molecules of known and potential therapeutic relevance to schizophrenia, and are consistent with leading pathophysiological hypotheses. Independent of genes expressed in brain, associations were enriched among genes expressed in tissues that have important roles in immunity, providing support for the speculated link between the immune system and schizophrenia.

6,809 citations

Frequently Asked Questions (14)
Q1. How many items per factor were used in the deCODE study?

Scores for agreeableness, conscientiousness, extraversion, neuroticism and openness were computed using 8 to 10 items per factor40. 

In GPC-2, harmonization of measures for neuroticism and extraversion across 9 inventories and 29 cohorts was performed by applying Item Response Theory (IRT) to avoid personality scores being influenced by the number of items and the specific inventory. 

Given improved power for detection of genetic effects with larger sample sizes in GWAS, the authors performed a combined meta-analysis of 23andMe and GPC samples using METAL54 on the basis of the sample-size based method. 

Because the authors used only GWAS summary statistics, the authors cannot estimate nonadditive genetic variance, such as dominance and epistasis, or genetic contributions from structural (e.g., inversions) or rare variants. 

Genotype data of GPC-1 were then imputed using HapMap phase II CEU (Utah residents with Northern and Western European ancestry from the CEPH collection) as a reference panel including ~2.5 million SNPs6 and, alternatively, a reference panel from 1000 Genomes Project phase 1 version 3 was used to impute the genotype data of GPC-2 (refs. 7,35,36). 

10. Tabarés-Seisdedos, R. & Rubenstein, J.L.R. Chromosome 8p as a potential hub for developmental neuropsychiatric disorders: implications for schizophrenia, autism and cancer. 

Because thepersonality measures were not assessed similarly across GPC-2 cohorts, the harmonized or calibrated scores of personality are more comparable, thereby increasing power for meta-analysis of GWAS using fixed-effect models7,35,36. 

The original 13,341,935 SNPs were reduced into 9,270,523 SNPs in their subsequent analyses (e.g., LD correlation structure is used to determine LD-independent SNPs). 

Maladaptive or extreme variants of personality may contribute to the persistence of, or vulnerability to, psychiatric disorders and comorbidity5,11,21,23. 

156 VOLUME 49 | NUMBER 1 | JANUARY 2017 Nature GeNeticsCaveats of this study include that the sample size, although large, is underpowered to detect the majority of associated SNPs, given the conservative GWAS significance threshold. 

All deCODE studies were approved by the appropriate bioethics and data-protection authorities, and all subjects donating blood provided informed consent. 

In addition to phenotypic relationships, twin and GWAS studies have demonstrated genetic correlations between personality traits and psychiatric disorders3,21,23, though most focus on neuroticism (Supplementary Note). 

The posterior probabilities (PP0, PP1, PP2, PP3 and PP4) for five hypotheses (H0, no association with either trait; H1, association with trait 1, not with trait 2; H2, association with trait 2, not with trait 1; H3, independent association with two traits, two independent SNPs; H4, association with both traits, one shared SNP)18 were calculated to determine which hypothesis is supported by the data. 

This procedure resulted in six distributions of eQTL P values that matched the significant SNPs in terms of allele frequencies and TSS, and these were used to determine the ranking of eQTL associations (Supplementary Tables 1 and 5). 

Trending Questions (1)
Does genetic factor influence personality?

Yes, genetic factors influence personality traits, as indicated by the identification of six genetic loci significantly associated with personality traits in a meta-analysis of genome-wide association studies.