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Journal ArticleDOI

Going back to the roots: the microbial ecology of the rhizosphere.

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TLDR
Recent developments in rhizosphere research are discussed in relation to assessing the contribution of the micro- and macroflora to sustainable agriculture, nature conservation, the development of bio-energy crops and the mitigation of climate change.
Abstract
The rhizosphere is the interface between plant roots and soil where interactions among a myriad of microorganisms and invertebrates affect biogeochemical cycling, plant growth and tolerance to biotic and abiotic stress. The rhizosphere is intriguingly complex and dynamic, and understanding its ecology and evolution is key to enhancing plant productivity and ecosystem functioning. Novel insights into key factors and evolutionary processes shaping the rhizosphere microbiome will greatly benefit from integrating reductionist and systems-based approaches in both agricultural and natural ecosystems. Here, we discuss recent developments in rhizosphere research in relation to assessing the contribution of the micro- and macroflora to sustainable agriculture, nature conservation, the development of bio-energy crops and the mitigation of climate change.

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Citations
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Belowground biodiversity and ecosystem functioning

TL;DR: Recent progress in understanding belowground biodiversity and its role in determining the ecological and evolutionary responses of terrestrial ecosystems to current and future environmental change are reviewed.
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Induced systemic resistance by beneficial microbes

TL;DR: This review focuses on molecular processes at the interface between plant roots and ISR-eliciting mutualists, and on the progress in the understanding of ISR signaling and systemic defense priming.
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Embracing the unknown: disentangling the complexities of the soil microbiome.

TL;DR: Although most soil microorganisms remain undescribed, the field is now poised to identify how to manipulate and manage the soil microbiome to increase soil fertility, improve crop production and improve the understanding of how terrestrial ecosystems will respond to environmental change.
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A communal catalogue reveals Earth’s multiscale microbial diversity

TL;DR: A meta-analysis of microbial community samples collected by hundreds of researchers for the Earth Microbiome Project is presented, creating both a reference database giving global context to DNA sequence data and a framework for incorporating data from future studies, fostering increasingly complete characterization of Earth’s microbial diversity.
References
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Journal ArticleDOI

The diversity and biogeography of soil bacterial communities

TL;DR: Bacterial diversity was highest in neutral soils and lower in acidic soils, with soils from the Peruvian Amazon the most acidic and least diverse in this study.
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Plant-growth-promoting rhizobacteria.

TL;DR: This review restricts itself to bacteria that are derived from and exert this effect on the root and generally designated as PGPR (plant-growth-promoting rhizobacteria), which can be direct or indirect in their effects on plant growth.
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Ecological linkages between aboveground and belowground biota.

TL;DR: This work shows how aboveground and belowground components are closely interlinked at the community level, reinforced by a greater degree of specificity between plants and soil organisms than has been previously supposed.
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The Role of Root Exudates in Rhizosphere Interactions with Plants and Other Organisms

TL;DR: Recent advances in elucidating the role of root exudates in interactions between plant roots and other plants, microbes, and nematodes present in the rhizosphere are described.
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The rhizosphere microbiome and plant health

TL;DR: In this article, the authors discuss evidence that upon pathogen or insect attack, plants are able to recruit protective microorganisms, and enhance microbial activity to suppress pathogens in the rhizosphere.
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