scispace - formally typeset
Search or ask a question
Journal ArticleDOI

Hyperthermophilic Composting Accelerates the Removal of Antibiotic Resistance Genes and Mobile Genetic Elements in Sewage Sludge

TL;DR: It is suggested that hyperthermophilic composting can significantly enhance the removal of ARGs and MGEs and that the mechanisms of ARG and M GE removal can depend on composting temperature.
Abstract: Composting is an efficient way to convert organic waste into fertilizers. However, waste materials often contain large amounts of antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) that can reduce the efficacy of antibiotic treatments when transmitted to humans. Because conventional composting often fails to remove these compounds, we evaluated if hyperthermophilic composting with elevated temperature is more efficient at removing ARGs and MGEs and explored the underlying mechanisms of ARG removal of the two composting methods. We found that hyperthermophilic composting removed ARGs and MGEs more efficiently than conventional composting (89% and 49%, respectively). Furthermore, the half-lives of ARGs and MGEs were lower in hyperthermophilic compositing compared to conventional composting (67% and 58%, respectively). More-efficient removal of ARGs and MGEs was associated with a higher reduction in bacterial abundance and diversity of potential ARG hosts. Partial least-squares path modeling suggested that reduction of MGEs played a key role in ARG removal in hyperthermophilic composting, while ARG reduction was mainly driven by changes in bacterial community composition under conventional composting. Together these results suggest that hyperthermophilic composting can significantly enhance the removal of ARGs and MGEs and that the mechanisms of ARG and MGE removal can depend on composting temperature.

Summary (4 min read)

1 Introduction

  • Cooperative advertising programs are monetary incentives o¤ered by manufacturers to their retailers to boost advertising e¤orts for their products.
  • The authors analyze the strategies, the pro t functions and the inventory policy in the two scenarios and contrast the results to check the suitability of a cooperative advertising program within the aforementioned settings.
  • Further, the authors extend their model to incorporate four special cases.

2 Model

  • Consider a supply chain formed by one manufacturer,M , and one retailer, R. Both rms make their decisions over an in nite time horizon.
  • The marginal e¤ect of price on demand is modeled through the positive parameter .
  • Is given, meaning that M and R are engaged in a long-term commitment to share their inventory costs and revenues.
  • Whenever the cooperative advertising program is implemented, M pays a portion of R s advertising costs at a rate of B (t).
  • That is the decisions of the supply chain are functions of the current level of the inventory (the state variable), Y .

3 Equilibrium solutions

  • The authors solve the dynamic optimization problems and obtain the equilibrium solutions for both the benchmark and the cooperative advertising games.
  • As for all conventional solutions in dynamic games with in nite time horizon, all strategies and value functions will be written exclusively as functions of the state variable.
  • 1See Co-opadvertisingprograms.com, the on-line database of NRP for coop advertising programs (http://www.coopsourcebook.com/coop_sample.htm).

3.1 The Benchmark scenario (no cooperative advertising)

  • The authors start by solving the benchmark (non-cooperative) game, denoted by N , in which a cooperative advertising program is not implemented.
  • The game evolves according to the following moves.
  • The solution to the benchmark game yields the equilibrium feedback strategy uN (Y ) for M .
  • By using these strategies in Eq. (2) and solving the di¤erential equation, the optimal time-path for the inventory level is given by Y N (t) ; for all t 0: Proposition 1.

3.2 The cooperative advertising scenario

  • In the cooperative advertising scenario, denoted by C, M o¤ers a cooperative advertising program to R.
  • The manufacturer takes into account the retailer s best-response functions and optimally sets uC(Y ) and BC(Y ).
  • Solving the di¤erential equation in (2), the authors get the optimal time-path for the inventory level, Y C(t), for all t 0.
  • The equilibrium solution is provided in the next proposition.
  • In particular, the cooperative advertising support rate also depends on the inventory level held in the channel.

4 Numerical analysis

  • Due to the complexity of their model in each game, the parameter values obtained from solving the Riccati s systems of equations are heavily coupled, which preclude any analytical analysis.
  • After xing the benchmark parameter values, the authors characterize the behavior of the di¤erent variables and payo¤s at the steady state (Sections 4.1 and 4.2).
  • Between the two real roots, only one satis es all of the model s assumptions, speci cally positive strategies, demand, inventory and pro ts at the steady state.
  • This is due to the role played by the inventory, which also determines the market potential and then the sales development.

4.3 Comparison between the cooperative and non-cooperative games

  • After the analysis at the steady-state, the authors now x the benchmark parameter values and focus on analyzing the e¤ects of the sharing parameter, .
  • In doing that, the authors seek to identify the region in which a cooperative program is an e¢ cient mechanism and investigate how strategies, demand, inventory and pro ts change accordingly.
  • The authors.

4.3.1 The e¤ects of the sharing parameter on strategies

  • As displayed in Figure 1, a positive relationship exists between M s contribution to R s advertising e¤orts and the sharing parameter, .
  • Second, the e¤ect of the sharing parameter on advertising is reversed when a cooperative advertising program is implemented.
  • Therefore, the the share, the the advertising e¤orts.
  • When the sharing parameter is high, R sets a high price to make M economically worse o¤.
  • A cooperative program has a positive e¤ect on M s production decisions.

4.3.2 The e¤ects of the sharing parameter on inventory

  • Figure 5 displays the relationship between inventory and the sharing parameter in the two scenarios analyzed.
  • When M s share is low, he has less willingness to produce within this business, thus low inventory leads to low production rate and, consequently, to a low market potential.
  • In such cases, inventory is always larger than the production rate and the demand.
  • In fact, increasing sharing parameter values incentivizes R to advertise more, thus increasing inventory turnover.
  • Thus, a cooperative program on advertising e¤orts is highly e¢ cient as it decreases the amount of inventory in the supply chain and this e¤ect is quasi sharing parameter independent, meaning that the inventory (and its related costs) will be considerably lowered with the presence of a cooperative program.

4.3.3 The e¤ects of the sharing parameter on pro ts

  • Figure 6 shows M s pro ts changes according to the sharing parameter in both scenarios.
  • When rms do not implement a cooperative program, M would lead the negotiation to the largest possible sharing parameter value.
  • When > ; M will avoid cooperative advertising as it leads to lower sales due to high prices.
  • As displayed in Figure 7, the patterns of R s pro ts follow the opposite patterns of M s pro ts in both scenarios.
  • The authors general ndings suggest that when the supply chain problem involves operational issues such as production and inventory, beside marketing issues such as pricing and advertising, the region in which a cooperative program by means of a support program turns out to be economically worthwhile is very limited and the adoption of this coordination mechanism very challenging.

4.3.4 Time-trajectories analysis

  • The comparisons of the value functions at the steady-state as earlier considered assume that the authors compute the accumulated pro ts along the optimal trajectory of the inventory level when the initial inventory is already at the steady-state value.
  • The authors display the full analysis on the trajectories for strategies, demand.
  • The authors show that the results established at the steady state can be replicated when the initial inventory level is higher or equal to the steady state.
  • The optimal time-paths of the benchmark and the cooperative advertising scenarios never cross.
  • From the previous analysis, the authors know that at the steady state all variables take a larger value under the C Scenario than under the N Scenario.

5 Special cases

  • The authors develop four special cases, which are variants of their original model.
  • In particular, the authors develop three special cases based on the use of a classical wholesale price contract under a VMI policy, the use of di¤erent sharing parameters for costs and revenues, the presence of inventory obsolescence, as well as the relationship between pricing and promotion in the demand function.

5.1 Special case I - Wholesale price with VMI and a cooperative program

  • The authors develop a dynamic game that conserves all ingredients of the model developed in Eqs. (5) (6) but in which rms use a classical wholesale price contract to manage the nancial ows.
  • R sets the retail price without sharing anything with M .
  • Nevertheless, the authors aim at exploring the e¢ ciency of cooperative programs under a WPC and VMI policy.

5.2 Special case II - VMI with a RSC and di¤erent sharing parameters for

  • So far, the authors discuss their settings by assuming that the supply chain rms use the same sharing rule, ; for both revenues and inventory costs.
  • In Figure 8, the region of r values in which M obtains larger pro ts enlarges comparatively to the ones in Figure 6, as the maximum sharing parameter values moves from 0.2725 to 0.2825.
  • In Figure 9, R shows the same preferences as in Figure 7, thus she always opts for the implementation of a cooperative program, independent of using similar or di¤erent sharing rules for pro ts and inventory costs.
  • The authors investigate the e¤ect of inventory obsolescence on rms pro ts and on cooperative programs e¤ectiveness.

5.4 Special case IV - VMI with a RSC and R

  • In the numerical analysis that the authors developed earlier, they assumed the parameter values to be xed in the demand function such that > ; meaning that demand is more sensitive to price than to promotion.
  • The authors relax this assumption and assume that can be higher or lower than :.
  • The analysis of pro ts, which is displayed in Figure 13, leads to the following observations: 1. When the price e¤ect is lower than the promotion s e¤ect ( < ), both rms gain higher pro ts in each game.
  • Consistently with Figure 13, M is willing to implement a cooperative program only for small regions of ; hence following the same results as in Figure 6.
  • Note that the region of interest is larger than in the benchmark case, which shows that there is a higher chance to bene t from coordination through a cooperative program when the interested strategy (promotion in their games) is more important than others in developing sales.

6 Conclusions

  • The cooperative advertising literature has mostly studied the e¤ects of these programs considering marketing (demand-side) variables, such as, advertising and prices.
  • Nevertheless, when a cooperative program is in place, R invests more in advertising even when the share she retains decreases due to the presence of a support program whose amplitude increases with the sharing parameter.
  • Rms are not able to coordinate their chain through a cooperative program when a VMI and a wholesale price contract coexist.
  • Even with such a simplistic chain structure, the authors obtained complex results that could not have been analyzed analytically.
  • One can relax this assumption by assuming that M works in a make-to-stock context and keeps the inventory, while R sells products under a purchase-to-order setting.

Did you find this useful? Give us your feedback

Content maybe subject to copyright    Report

This is a repository copy of Hyperthermophilic composting accelerates the removal of
antibiotic resistance genes and mobile genetic elements in sewage sludge.
White Rose Research Online URL for this paper:
https://eprints.whiterose.ac.uk/125756/
Version: Accepted Version
Article:
Liao, Hanpeng, Lu, Xiaomei, Rensing, Christopher et al. (7 more authors) (2017)
Hyperthermophilic composting accelerates the removal of antibiotic resistance genes and
mobile genetic elements in sewage sludge. Environmental Science and Technology. 266–
276. ISSN 1520-5851
https://doi.org/10.1021/acs.est.7b04483
eprints@whiterose.ac.uk
https://eprints.whiterose.ac.uk/
Reuse
Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless
indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by
national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of
the full text version. This is indicated by the licence information on the White Rose Research Online record
for the item.
Takedown
If you consider content in White Rose Research Online to be in breach of UK law, please notify us by
emailing eprints@whiterose.ac.uk including the URL of the record and the reason for the withdrawal request.

Subscriber access provided by FUJIAN AG & FORESTRY UNIV LIB
Environmental Science & Technology is published by the American Chemical Society.
1155 Sixteenth Street N.W., Washington, DC 20036
Published by American Chemical Society. Copyright © American Chemical Society.
However, no copyright claim is made to original U.S. Government works, or works
produced by employees of any Commonwealth realm Crown government in the course
of their duties.
Article
Hyperthermophilic composting accelerates the removal of antibiotic
resistance genes and mobile genetic elements in sewage sludge
Hanpeng Liao, Xiaomei Lu, Christopher Rensing, Ville Petri Friman, Stefan
Geisen, Zhi Chen, Zhen Yu, Zhong Wei, Shungui Zhou, and Yongguan Zhu
Environ. Sci. Technol., Just Accepted Manuscript • DOI: 10.1021/acs.est.7b04483 • Publication Date (Web): 04 Dec 2017
Downloaded from http://pubs.acs.org on December 4, 2017
Just Accepted
“Just Accepted” manuscripts have been peer-reviewed and accepted for publication. They are posted
online prior to technical editing, formatting for publication and author proofing. The American Chemical
Society provides “Just Accepted” as a free service to the research community to expedite the
dissemination of scientific material as soon as possible after acceptance. “Just Accepted” manuscripts
appear in full in PDF format accompanied by an HTML abstract. “Just Accepted” manuscripts have been
fully peer reviewed, but should not be considered the official version of record. They are accessible to all
readers and citable by the Digital Object Identifier (DOI®). “Just Accepted” is an optional service offered
to authors. Therefore, the “Just Accepted” Web site may not include all articles that will be published
in the journal. After a manuscript is technically edited and formatted, it will be removed from the “Just
Accepted” Web site and published as an ASAP article. Note that technical editing may introduce minor
changes to the manuscript text and/or graphics which could affect content, and all legal disclaimers
and ethical guidelines that apply to the journal pertain. ACS cannot be held responsible for errors
or consequences arising from the use of information contained in these “Just Accepted” manuscripts.

       
1

2
3





 
4

 !
"
 #
$
 
! 
%
5
6

&'()*+*,'-
7
( - ,' & .( - * /'* 0 "111
8
2
9

3  ,' 4(+*   ( - ,' &
10
.(-*/'*0"1112
11

56*#7#*!81"55/'*!9!9/)2
12

5  : ,(* ;- 3  ,(* # $%11
13
;-2
14
"
- )* +*  3- .<'   -
15
4 - 3  ,(<' (( = :(*
16
0"1$"12
17
$
> '( )* +  8( - # /0 ;& .(
18
/'*;&11?"2
19
%
)* +  /+ ,' -  3  /+ ,' 
20
.(-*(($1@
21
22
-A@ 
23
,A0B@-@(ACD$<"?1<D$?D"1?
24
25
26
27
28
29
30
Page 1 of 29
ACS Paragon Plus Environment
Environmental Science & Technology


31
  ( 7*  (' (7 0@ 7'
32
7(+((E.F-
33
+(E4,F(-(((*+(
34
7-@6(('('
35
 (- 7 '-  *( ( 7 '-
36
   ( ' . - 4, - G- 
37
-* (  .<' +7 7 ( -@ #
38
-*(('-.-4,(*
39
 ('(ED?H - ?H ('*F@  <'
40
 . - 4, 7 7 *( (-  ('
41
( E$%H - "DH ('*F@ 4 ( '  . -
42
4,7(-7-(+(+-(--'*
43
.@I---(
44
4, *-  9*  .<'  *( ( 7
45
. -( 7 * -' +* (  +( (* (
46
-('(@:*(
47
( ( (* (  '  . - 4,-  
48
(.-4,'(--(@
49
50
+-+((.
51
52
53
54
55
56
57
58
59
60
Page 2 of 29
ACS Paragon Plus Environment
Environmental Science & Technology


EG@D@%(+*@%$(F
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
Page 3 of 29
ACS Paragon Plus Environment
Environmental Science & Technology

Citations
More filters
Journal ArticleDOI
TL;DR: In this article, a new method for metagenomic biomarker discovery by way of class comparison, tests of biological consistency and effect size estimation is described and validated, which addresses the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities.
Abstract: This study describes and validates a new method for metagenomic biomarker discovery by way of class comparison, tests of biological consistency and effect size estimation. This addresses the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities, which is a central problem to the study of metagenomics. We extensively validate our method on several microbiomes and a convenient online interface for the method is provided at http://huttenhower.sph.harvard.edu/lefse/.

3,060 citations

Journal ArticleDOI
TL;DR: Additional researches are needed, gathering chemical, microbiological and toxicological data to better understand the implied removal mechanisms, the interactions between both components and the environmental matrices and how composting process could be optimized to reduce the discharge of antibiotics and antibiotic resistance genes into the environment.

252 citations

Journal ArticleDOI
TL;DR: Results reveal the critical role of hyperthermophilic bacteria in MPs biodegradation during hTC, highlighting a promising strategy for sludge-based MPs removal from the real environment.

163 citations

Journal ArticleDOI
TL;DR: It is found that HTC running at the hyperthermophilic and thermophilic phases for 21 days, led to higher composting efficiency and techno-economic advantages over TC, and provided theoretical and practical guidance for managing sewage sludge by HTC.

132 citations


Cites background or methods from "Hyperthermophilic Composting Accele..."

  • ...The alpha-diversity (observed OTU, chao 1, Shannon and PD 17 whole indexes) and beta-diversity analyses were performed by QIIME (Quantitative 18 Insights Into Microbial Ecology) software package as described previously (Caporaso et 19 al., 2010; Liao et al., 2017)....

    [...]

  • ...Composting has advantages over current 9 disposal strategies like landfill or incarnation which can reduce the sludge volume by 10 40-50% and provide the final product as fertilizer or soil conditioner (Xiao et al., 2009; 11 Yuan et al., 2012; Hu et al., 2015; Liao et al., 2017; Wei et al., 2018)....

    [...]

  • ...1 Although there have been few reports concerning the HTC process (Tashiro et al. 2 2016; Liao et al., 2017), the prominent techno-economic characteristics of HTC remain 3 unclear....

    [...]

Journal ArticleDOI
TL;DR: Redundancy analysis enabled the relationship between spectral indices and composting parameters to be explained, demonstrating that these indices can be used for assessing the degree of humification.

106 citations

References
More filters
Journal ArticleDOI
TL;DR: An overview of the analysis pipeline and links to raw data and processed output from the runs with and without denoising are provided.
Abstract: Supplementary Figure 1 Overview of the analysis pipeline. Supplementary Table 1 Details of conventionally raised and conventionalized mouse samples. Supplementary Discussion Expanded discussion of QIIME analyses presented in the main text; Sequencing of 16S rRNA gene amplicons; QIIME analysis notes; Expanded Figure 1 legend; Links to raw data and processed output from the runs with and without denoising.

28,911 citations

Journal ArticleDOI
TL;DR: UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters and offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets.
Abstract: Motivation: Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. Results: UBLAST and USEARCH are new algorithms enabling sensitive local and global search of large sequence databases at exceptionally high speeds. They are often orders of magnitude faster than BLAST in practical applications, though sensitivity to distant protein relationships is lower. UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters. UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets. Availability: Binaries are available at no charge for non-commercial use at http://www.drive5.com/usearch Contact: [email protected] Supplementary information:Supplementary data are available at Bioinformatics online.

17,301 citations

Journal ArticleDOI
TL;DR: A new method for metagenomic biomarker discovery is described and validates by way of class comparison, tests of biological consistency and effect size estimation to address the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities.
Abstract: This study describes and validates a new method for metagenomic biomarker discovery by way of class comparison, tests of biological consistency and effect size estimation. This addresses the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities, which is a central problem to the study of metagenomics. We extensively validate our method on several microbiomes and a convenient online interface for the method is provided at http://huttenhower.sph.harvard.edu/lefse/.

9,057 citations

Journal ArticleDOI
TL;DR: PLS path modeling can be used for analyzing multiple tables so as to be related to more classical data analysis methods used in this field and some new improvements are proposed.

4,839 citations

Journal ArticleDOI
TL;DR: A ‘taxonomy to tree’ approach for transferring group names from an existing taxonomy to a tree topology is developed and used to apply the Greengenes, National Center for Biotechnology Information (NCBI) and cyanoDB (Cyanobacteria only) taxonomies to a de novo tree comprising 408 315 sequences.
Abstract: Reference phylogenies are crucial for providing a taxonomic framework for interpretation of marker gene and metagenomic surveys, which continue to reveal novel species at a remarkable rate. Greengenes is a dedicated full-length 16S rRNA gene database that provides users with a curated taxonomy based on de novo tree inference. We developed a 'taxonomy to tree' approach for transferring group names from an existing taxonomy to a tree topology, and used it to apply the Greengenes, National Center for Biotechnology Information (NCBI) and cyanoDB (Cyanobacteria only) taxonomies to a de novo tree comprising 408,315 sequences. We also incorporated explicit rank information provided by the NCBI taxonomy to group names (by prefixing rank designations) for better user orientation and classification consistency. The resulting merged taxonomy improved the classification of 75% of the sequences by one or more ranks relative to the original NCBI taxonomy with the most pronounced improvements occurring in under-classified environmental sequences. We also assessed candidate phyla (divisions) currently defined by NCBI and present recommendations for consolidation of 34 redundantly named groups. All intermediate results from the pipeline, which includes tree inference, jackknifing and transfer of a donor taxonomy to a recipient tree (tax2tree) are available for download. The improved Greengenes taxonomy should provide important infrastructure for a wide range of megasequencing projects studying ecosystems on scales ranging from our own bodies (the Human Microbiome Project) to the entire planet (the Earth Microbiome Project). The implementation of the software can be obtained from http://sourceforge.net/projects/tax2tree/.

4,310 citations

Related Papers (5)
Frequently Asked Questions (2)
Q1. What contributions have the authors mentioned in the paper "Hyperthermophilic composting accelerates the removal of antibiotic resistance genes and mobile genetic elements in sewage sludge" ?

This is indicated by the licence information on the White Rose Research Online record for the item. 

4@ + 661 ' - 0 @ 0 ! + ! + 06.71 5 E F $@ 662 @ < - >@ @2 4 (9 @ 3@2 ) 9 @2 ) ( 3@ @2 !@< @2 ! .@ @2 4 G7 @2 . ' @ 3@ 663 - + ( - - + ( ( 7 - ( 7 @ 6+! + 664 1 + 7! - 06681 #5 E F 1D$< 1D@ 665 @ ,@ @2 : 9 * @2 @2 4 &V <6 4@2 < @2 ; ' )@ 4@2 - 4@2 + @2 666 * <. #@2 6 4@ :@ 3 ( ( - ( + - 7< ( + @ 0 !