In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Citations
4 citations
4 citations
4 citations
Cites background or methods from "In Silico Detection and Typing of P..."
...Typing phage-plasmids in terms of plasmid incompatibility and virus taxonomy We used PlasmidFinder 2.0.1 (57) with default parameters to class the incompatibility types of P-Ps (suppl. table 4)....
[...]
...The Inc types of P-Ps were predicted using PlasmidFinder (57)....
[...]
...This is somewhat expected, since the PlasmidFinder database is much more detailed for Enterobacteriaceae than for other clades (57) and even in the remaining well-studied Proteobacteria most plasmids cannot be typed (69)....
[...]
...1 (57) with default parameters to class the incompatibility types of P-Ps (suppl....
[...]
...21 for Enterobacteriaceae than for other clades (57) and even in the remaining well-studied Proteobacteria most plasmids cannot be typed (69)....
[...]
4 citations
4 citations
References
3,956 citations
"In Silico Detection and Typing of P..." refers methods in this paper
...To extract the relevant information from the large amount of data generated, a Web-based tool, ResFinder, for the identification of acquired or intrinsically present antimicrobial resistance genes in whole-genome data was recently developed (15)....
[...]
2,934 citations
"In Silico Detection and Typing of P..." refers background in this paper
...In particular, the replicase proteins showing the pfam02387 or pfam01051 conserved domains were assigned to the FII and FIB groups, respectively (31)....
[...]
2,163 citations
"In Silico Detection and Typing of P..." refers methods in this paper
...A collection of 24 previously characterized and fully FIG 1 Numbers of fully sequenced plasmids (y axis) classified into incompatibility groups occurring in the different bacterial species of the Enterobacteriaceae family....
[...]
...Since 2005, a PCR-based replicon typing (PBRT) scheme has been available that targets in multiplex PCRs the replicons of the major plasmid families occurring in members of the family Enterobacteriaceae (2)....
[...]
...Here, we present two free, easy-to-use Web tools, PlasmidFinder and pMLST, to analyze and classify plasmids from bacterial species of the family Enterobacteriaceae....
[...]
...Here, we describe the design of two new easy-to-use Web tools useful for the rapid identification of plasmids in Enterobacteriaceae species that are of interest for epidemiological and clinical microbiology investigations of the plasmid-associated spread of antimicrobial resistance....
[...]
...This method was initially developed to detect the replicons of plasmids belonging to the 18 major incompatibility (Inc) groups of Enterobacteriaceae species (3)....
[...]
1,943 citations
1,620 citations
"In Silico Detection and Typing of P..." refers methods in this paper
...If raw sequence reads are uploaded, they are first assembled (after the sequencing platform is given by the user) as described previously (16)....
[...]