Inference of macromolecular assemblies from crystalline state.
Citations
11,023 citations
Cites methods from "Inference of macromolecular assembl..."
...The quaternary structure of the protein can be analysed with PISA (Krissinel & Henrick, 2007)....
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2,159 citations
1,844 citations
Cites background or methods from "Inference of macromolecular assembl..."
...The authors thank Florian Kiefer for his support with generating the oligomeric assemblies from PISA and all members of the group for fruitful discussions....
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...The biological unit reference set contains the most likely biologically relevant oligomeric assembly generated by PISA (Krissinel and Henrick, 2007)....
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...The PISA database (Krissinel and Henrick, 2007) was used to assign the most likely oligomeric state and generate the coordinates of the assembly for all entries of the dataset....
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...As expected, the QMEAN Z-score of −3.3 for toxofilin (chain T) in isolation is 346 [12:50 28/1/2011 Bioinformatics-btq662.tex] Page: 347 343–350 2q97A 354 −1.2 −1.2 −0.5 −0.5 −1.0 2q97T 109 −3.3 −2.2 −1.8 −3.7 −1.1 PISAa 926 −1.6 −0.9 −0.6 −1.2 −1.0 aMost probable assembly as proposed by PISA: a tetramer consisting of two copies of the chains A and T....
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1,378 citations
Cites methods from "Inference of macromolecular assembl..."
...Oligomeric states are taken from the PDBe (29) or generated by PISA (30), excluding a number of cases in which biological units were chosen in accordance with publications....
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...For example, secretory phospolipases A2 and cytochromes P450 were taken in the physologically relevant monomeric state, even though PISA identifies some of them as stable dimers....
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1,306 citations
References
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