InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
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Cites background or methods from "InnateDB: systems biology of innate..."
...We confirmed our approaches by interrogating these gene sets with the GO analysis, pathway analysis, and transcription factor (TF) binding prediction tools provided by InnateDB, with the same outcome (Tables S2C–S2K)....
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...A complementary approach has been introduced by InnateDB (Breuer et al., 2013)....
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...…(DZNE), 53127 Bonn, Germany 5The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh, Midlothian EH25 9RG, Scotland, UK *Correspondence: j.schultze@uni-bonn.de http://dx.doi.org/10.1016/j.immuni.2014.01.006 Open access under CC BY license....
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1,602 citations
Cites background from "InnateDB: systems biology of innate..."
...Other databases such as I2D (Interologous Interaction Database) (20), which curates interaction protein interaction data relevant to the development of cancer and InnateDB (21), capturing both protein and gene interactions relevant to the process of innate immunity, choose to select appropriate records directly from the ftp site for subsequent import into their own resources....
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Cites background from "InnateDB: systems biology of innate..."
...Other major meta-database resources that disseminate BioGRID data include STRING (32), Pathway Commons (31), Gene Mania (89), InnateDB (90) and FlyAtlas (91) (see https://wiki.thebiogrid.org/doku.php/partners for full list)....
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...Other major meta-database resources that disseminate BioGRID data include STRING (32), Pathway Commons (31), Gene Mania (89), InnateDB (90) and FlyAtlas (91) (see https://wiki....
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675 citations
References
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"InnateDB: systems biology of innate..." refers methods in this paper
...Additionally, interaction networks may also be visualized in our Cerebral program (19), a Java plugin for the Cytoscape network visualization software (20,21), which uses subcellular localization information to orientate interaction networks in a more biologically intuitive pathway-like layout....
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