Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding
Citations
512 citations
Cites background from "Inter simple sequence repeat (ISSR)..."
..., ASAP, ASO and AS-PCR), some synonymous (e.g., ISSR, RAMP, RAM, SPAR, AMP-PCR, MP-PCR, and ASSR; Reddy et al., 2002), and some identical (e....
[...]
...J. Biotechnol. egren et al., 1988) amplified fragment length polymorphism (AFLP; Vos et al., 1995), anchored microsatellite primed PCR (AMP-PCR; Zietkiewicz et al., 1994), anchored simple sequence repeats (ASSR; Wang et al., 1998), arbitrarily primed polymerase chain reaction (AP-PCR; Welsh and McClelland, 1990), cleaved amplified polymorphic sequence (CAPS; Akopyanz et al., 1992; Konieczny and Ausubel, 1993), degenerate oligonucleotide primed PCR (DOP-PCR; Telenius et al., 1992), diversity arrays technology (DArT; Jaccoud et al., 2001), DNA amplification fingerprinting (DAF; Caetano-Anolles et al., 1991), expressed sequence tags (EST; Adams et al., (1991), inter-simple sequence repeat (ISSR; Zietkiewicz et al., 1994), inverse PCR (IPCR; Triglia et al., 1988), inverse sequence-tagged repeats (ISTR; Rohde, 1996), microsatellite primed PCR (MP-PCR; Meyer et al., 1993), multiplexed allele-specific diagnostic assay (MASDA; Shuber et al., 1997), random amplified microsatellite polymorphisms (RAMP; Wu et al., 1994), random amplified microsatellites (RAM; Hantula et al., 1996), random amplified polymorphic DNA (RAPD; Williams et al., 1990), restriction fragment length polymorphism (RFLP; Botstein et al., 1980), selective amplification of microsatellite polymorphic loci (SAMPL; Morgante and Vogel, 1994), sequence characterized amplified regions (SCAR; Paran and Michelmore, 1993), sequence specific amplification polymorphisms (S-SAP; Waugh et al., 1997), sequence tagged microsatelite site (STMS; Beckmann and Soller, 1990), sequence tagged site (STS; Olsen et al., 1989), short tandem repeats (STR; Hamada et al., 1982), simple sequence length polymorphism (SSLP; Dietrich et al., 1992), simple sequence repeats (SSR; Akkaya et al., 1992), single nucleotide polymorphism (SNP; Jordan and Humphries 1994), single primer amplification reactions (SPAR; Gupta et al., 1994), single stranded conformational polymorphism (SSCP; Orita et al., 1989), site-selected insertion PCR (SSI; Koes et al., 1995), strand displacement amplification (SDA; Walker et al., 1992), and variable number tandem repeat (VNTR; Nakamura et al., 1987)....
[...]
...Although some of these marker types are very similar (e.g., ASAP, ASO and AS-PCR), some synonymous (e.g., ISSR, RAMP, RAM, SPAR, AMP-PCR, MP-PCR, and ASSR; Reddy et al., 2002), and some identical (e.g., SSLP, STMS, STR and SSR), there are still a wide range of techniques for researchers to choose upon....
[...]
...(a) Unanchored (AG)n primer can anneal anywhere in the (TC)n repeat region on the template DNA leading to slippage and ultimately smear formation; (b) (AG)n primer anchored with 2 nucleotides (NN) at the 3’ end anneals at specific regions on the template DNA and produces clear bands; (c) (AG)n primer anchored with 2 nucleotides (NN) at the 5’ end anneals at specific regions and amplifies part of the repeat region also leading to larger bands (Reddy et al., 2002)....
[...]
...…some of these marker types are very similar (e.g., ASAP, ASO and AS-PCR), some synonymous (e.g., ISSR, RAMP, RAM, SPAR, AMP-PCR, MP-PCR, and ASSR; Reddy et al., 2002), and some identical (e.g., SSLP, STMS, STR and SSR), there are still a wide range of techniques for researchers to choose upon....
[...]
478 citations
254 citations
Cites methods from "Inter simple sequence repeat (ISSR)..."
...The ISSR technique has been used in genetic relationships in genus Vigna (Ajibade et al. 2000) and in several other crops (Reddy et al. 2002)....
[...]
203 citations
155 citations
Cites methods from "Inter simple sequence repeat (ISSR)..."
...ISSR markers can reveal genetic pholymorphisms and identify individual genotypes, and this method has been widely used (Reddy et al., 2002; Ai-hua & Jan-bo, 2006; Meloni et al., 2006)....
[...]
References
3,292 citations
"Inter simple sequence repeat (ISSR)..." refers background or methods in this paper
...the flanking sequences (Zietkiewicz et al., 1994) (Figure 1)....
[...]
...The primers used can be either unanchored (Gupta et al., 1994; Meyer et al., 1993; Wu et al., 1994) or more usually anchored at 3’ or 5’ end with 1 to 4 degenerate bases extended into the flanking sequences (Zietkiewicz et al., 1994) (Figure 1)....
[...]
...ISSR-PCR is a technique that overcomes most of these limitations (Zietkiewicz et al., 1994; Gupta et al., 1994; Wu et al., 1994; Meyer et al., 1993)....
[...]
2,312 citations
"Inter simple sequence repeat (ISSR)..." refers background in this paper
...(a) Template DNA Slippage of DNA polymerase during DNA replication and failure to repair mismatches is considered as a mechanism for creation and hypervariability of SSRs (Levinson & Gutman, 1987)....
[...]
...Slippage of DNA polymerase during DNA replication and failure to repair mismatches is considered as a mechanism for creation and hypervariability of SSRs ( Levinson & Gutman, 1987 )....
[...]
1,382 citations
"Inter simple sequence repeat (ISSR)..." refers background in this paper
...SSRs or microsatellites are short tandem repeats (STRs) or variable number of tandem repeats (VNTRs) of 1–4 bases of DNA ubiquitously present in eukaryote genomes (Tautz & Renz, 1984)....
[...]
...SSRs or microsatellites are short tandem repeats (STRs) or variable number of tandem repeats (VNTRs) of 1–4 bases of DNA ubiquitously present in eukaryote genomes ( Tautz & Renz, 1984 )....
[...]
1,173 citations
"Inter simple sequence repeat (ISSR)..." refers background in this paper
...Similarly, 4 primers were sufficient to distinguish 34 cultivars of potato ( Prevost & Wilkinson, 1999 ) and 3 primers could distinguish 16 genotypes of redcurrant (Lanham & Brennan, 1998)....
[...]
...Resolving power Rp is an index developed to compare the value of different primers in terms of the informative bands obtained in a given set of germplasm (Prevost & Wilkinson, 1999)....
[...]
...Cocoa germplasm Charters & Wilkinson, 2000 Potato cultivars Prevost & Wilkinson, 1999 Chrysanthemum cultivars Wolff et al., 1995 2 Genetic diversity and phylogenetic analysis...
[...]
...of the informative bands obtained in a given set of germplasm ( Prevost & Wilkinson, 1999 )....
[...]
...Similarly, 4 primers were sufficient to distinguish 34 cultivars of potato (Prevost & Wilkinson, 1999) and 3 primers could distinguish 16 genotypes of redcurrant (Lanham & Brennan, 1998)....
[...]
910 citations
"Inter simple sequence repeat (ISSR)..." refers methods in this paper
...The commonly used polymerase chain reaction (PCR)-based DNA marker systems are random amplified polymorphic DNA (RAPD), amplified fragment length polymorphism (AFLP) and more recently simple sequence repeats (SSRs) or microsatellites (Staub et al., 1996; Gupta & Varshney, 2000)....
[...]
...The commonly used polymerase chain reaction (PCR)-based DNA marker systems are random amplified polymorphic DNA (RAPD), amplified fragment length polymorphism (AFLP) and more recently simple sequence repeats (SSRs) or microsatellites (Staub et al., 1996; Gupta & Varshney, 2000 )....
[...]