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Journal ArticleDOI

International Union of Pharmacology. LXXXIX. Update on the Extended Family of Chemokine Receptors and Introducing a New Nomenclature for Atypical Chemokine Receptors

TL;DR: This work reviews this extended family of chemokine receptors and Chemokine-binding proteins at the basic, translational, and clinical levels, including an update on drug development and introduces a new nomenclature for atypical chemokin receptors with the stem ACKR (atypicalChemokine receptor).
Abstract: Sixteen years ago, the Nomenclature Committee of the International Union of Pharmacology approved a system for naming human seven-transmembrane (7TM) G protein-coupled chemokine receptors, the large family of leukocyte chemoattractant receptors that regulates immune system development and function, in large part by mediating leukocyte trafficking. This was announced in Pharmacological Reviews in a major overview of the first decade of research in this field [Murphy PM, Baggiolini M, Charo IF, Hebert CA, Horuk R, Matsushima K, Miller LH, Oppenheim JJ, and Power CA (2000) Pharmacol Rev 52:145–176]. Since then, several new receptors have been discovered, and major advances have been made for the others in many areas, including structural biology, signal transduction mechanisms, biology, and pharmacology. New and diverse roles have been identified in infection, immunity, inflammation, development, cancer, and other areas. The first two drugs acting at chemokine receptors have been approved by the U.S. Food and Drug Administration (FDA), maraviroc targeting CCR5 in human immunodeficiency virus (HIV)/AIDS, and plerixafor targeting CXCR4 for stem cell mobilization for transplantation in cancer, and other candidates are now undergoing pivotal clinical trials for diverse disease indications. In addition, a subfamily of atypical chemokine receptors has emerged that may signal through arrestins instead of G proteins to act as chemokine scavengers, and many microbial and invertebrate G protein-coupled chemokine receptors and soluble chemokine-binding proteins have been described. Here, we review this extended family of chemokine receptors and chemokine-binding proteins at the basic, translational, and clinical levels, including an update on drug development. We also introduce a new nomenclature for atypical chemokine receptors with the stem ACKR (atypical chemokine receptor) approved by the Nomenclature Committee of the International Union of Pharmacology and the Human Genome Nomenclature Committee.
Citations
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Journal ArticleDOI
TL;DR: This review focuses on recent advances in understanding how the chemokine system orchestrates immune cell migration and positioning at the organismic level in homeostasis, in acute inflammation, and during the generation and regulation of adoptive primary and secondary immune responses in the lymphoid system and peripheral nonlymphoid tissue.
Abstract: Chemokines are chemotactic cytokines that control the migratory patterns and positioning of all immune cells. Although chemokines were initially appreciated as important mediators of acute inflammation, we now know that this complex system of approximately 50 endogenous chemokine ligands and 20 G protein–coupled seven-transmembrane signaling receptors is also critical for the generation of primary and secondary adaptive cellular and humoral immune responses. Recent studies demonstrate important roles for the chemokine system in the priming of naive T cells, in cell fate decisions such as effector and memory cell differentiation, and in regulatory T cell function. In this review, we focus on recent advances in understanding how the chemokine system orchestrates immune cell migration and positioning at the organismic level in homeostasis, in acute inflammation, and during the generation and regulation of adoptive primary and secondary immune responses in the lymphoid system and peripheral nonlymphoid tissue.

1,475 citations

Journal ArticleDOI
TL;DR: The structure and content of CellPhoneDB is outlined, procedures for inferring cell–cell communication networks from single-cell RNA sequencing data are provided and a practical step-by-step guide to help implement the protocol is presented.
Abstract: Cell–cell communication mediated by ligand–receptor complexes is critical to coordinating diverse biological processes, such as development, differentiation and inflammation. To investigate how the context-dependent crosstalk of different cell types enables physiological processes to proceed, we developed CellPhoneDB, a novel repository of ligands, receptors and their interactions. In contrast to other repositories, our database takes into account the subunit architecture of both ligands and receptors, representing heteromeric complexes accurately. We integrated our resource with a statistical framework that predicts enriched cellular interactions between two cell types from single-cell transcriptomics data. Here, we outline the structure and content of our repository, provide procedures for inferring cell–cell communication networks from single-cell RNA sequencing data and present a practical step-by-step guide to help implement the protocol. CellPhoneDB v.2.0 is an updated version of our resource that incorporates additional functionalities to enable users to introduce new interacting molecules and reduces the time and resources needed to interrogate large datasets. CellPhoneDB v.2.0 is publicly available, both as code and as a user-friendly web interface; it can be used by both experts and researchers with little experience in computational genomics. In our protocol, we demonstrate how to evaluate meaningful biological interactions with CellPhoneDB v.2.0 using published datasets. This protocol typically takes ~2 h to complete, from installation to statistical analysis and visualization, for a dataset of ~10 GB, 10,000 cells and 19 cell types, and using five threads. CellPhoneDB combines an interactive database and a statistical framework for the exploration of ligand–receptor interactions inferred from single-cell transcriptomics measurements.

1,392 citations

Journal ArticleDOI
14 Nov 2018-Nature
TL;DR: A single-cell atlas of the maternal–fetal interface reveals the cellular organization of the decidua and placenta, and the interactions that are critical for placentation and reproductive success, and develops a repository of ligand–receptor complexes and a statistical tool to predict the cell–cell communication via these molecular interactions.
Abstract: During early human pregnancy the uterine mucosa transforms into the decidua, into which the fetal placenta implants and where placental trophoblast cells intermingle and communicate with maternal cells. Trophoblast-decidual interactions underlie common diseases of pregnancy, including pre-eclampsia and stillbirth. Here we profile the transcriptomes of about 70,000 single cells from first-trimester placentas with matched maternal blood and decidual cells. The cellular composition of human decidua reveals subsets of perivascular and stromal cells that are located in distinct decidual layers. There are three major subsets of decidual natural killer cells that have distinctive immunomodulatory and chemokine profiles. We develop a repository of ligand-receptor complexes and a statistical tool to predict the cell-type specificity of cell-cell communication via these molecular interactions. Our data identify many regulatory interactions that prevent harmful innate or adaptive immune responses in this environment. Our single-cell atlas of the maternal-fetal interface reveals the cellular organization of the decidua and placenta, and the interactions that are critical for placentation and reproductive success.

1,315 citations

Journal ArticleDOI
TL;DR: This review will be aimed at providing an overview of the current knowledge on the involvement of the chemokine/chemokine-receptor system in the cytokine storm related to SARS-CoV-2 infection.

990 citations

Journal ArticleDOI
TL;DR: This Review examines in vivo observations of the recruitment of neutrophils from blood to tissues in models of blood-borne infections versus bacterial invasion through epithelial linings, and examines data on novel aspects of the activation of NADPH oxidase and the heterogeneity of phagosomes.
Abstract: In this Review we discuss data demonstrating recently recognized aspects of neutrophil homeostasis in the steady state, granulopoiesis in 'emergency' conditions and interactions of neutrophils with the adaptive immune system. We explore in vivo observations of the recruitment of neutrophils from blood to tissues in models of blood-borne infections versus bacterial invasion through epithelial linings. We examine data on novel aspects of the activation of NADPH oxidase and the heterogeneity of phagosomes and, finally, consider the importance of two neutrophil-derived biological agents: neutrophil extracellular traps and ectosomes.

675 citations

References
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Journal ArticleDOI
TL;DR: The origin, mechanisms of expansion and suppressive functions of MDSCs, as well as the potential to target these cells for therapeutic benefit are discussed.
Abstract: Myeloid-derived suppressor cells (MDSCs) are a heterogeneous population of cells that expand during cancer, inflammation and infection, and that have a remarkable ability to suppress T-cell responses. These cells constitute a unique component of the immune system that regulates immune responses in healthy individuals and in the context of various diseases. In this Review, we discuss the origin, mechanisms of expansion and suppressive functions of MDSCs, as well as the potential to target these cells for therapeutic benefit.

5,811 citations


"International Union of Pharmacology..." refers background in this paper

  • ...Inflammatory monocytes belong to a heterogeneous Gr1 population of so-called myeloidderived suppressor cells, which has been shown to support tumor progression via different mechanisms, including suppression of antitumor adaptive immune responses by regulatory T cells (Gabrilovich and Nagaraj, 2009)....

    [...]

  • ...…monocytes belong to a heterogeneous Gr1+ population of so-called myeloidderived suppressor cells, which has been shown to support tumor progression via different mechanisms, including suppression of antitumor adaptive immune responses by regulatory T cells (Gabrilovich and Nagaraj, 2009)....

    [...]

Journal ArticleDOI
14 Oct 1999-Nature
TL;DR: It is shown that expression of CCR7, a chemokine receptor that controls homing to secondary lymphoid organs, divides human memory T cells into two functionally distinct subsets, which are named central memory (TCM) and effector memory (TEM).
Abstract: Naive T lymphocytes travel to T-cell areas of secondary lymphoid organs in search of antigen presented by dendritic cells. Once activated, they proliferate vigorously, generating effector cells that can migrate to B-cell areas or to inflamed tissues. A fraction of primed T lymphocytes persists as circulating memory cells that can confer protection and give, upon secondary challenge, a qualitatively different and quantitatively enhanced response. The nature of the cells that mediate the different facets of immunological memory remains unresolved. Here we show that expression of CCR7, a chemokine receptor that controls homing to secondary lymphoid organs, divides human memory T cells into two functionally distinct subsets. CCR7- memory cells express receptors for migration to inflamed tissues and display immediate effector function. In contrast, CCR7+ memory cells express lymph-node homing receptors and lack immediate effector function, but efficiently stimulate dendritic cells and differentiate into CCR7- effector cells upon secondary stimulation. The CCR7+ and CCR7- T cells, which we have named central memory (TCM) and effector memory (TEM), differentiate in a step-wise fashion from naive T cells, persist for years after immunization and allow a division of labour in the memory response.

5,537 citations


"International Union of Pharmacology..." refers background in this paper

  • ...There is also evidence that T-cell zone chemokines such as CCL21 are bound to the surface of lymph node DCs in vivo and function to capture and prime naive T cells for activation by peptide-MHC....

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  • ...Finally, in B cells, CCRL2 was shown to bind CCL19 and to impair CCR7-dependent ERK1/2 phosphorylation and calcium flux in response to CCL19 but not CCL21 (Catusse et al., 2010)....

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  • ...It is now accepted that ACKR4 binds to the homeostatic chemokines CCL19, CCL21, and CCL25 and with lower affinity to CXCL13 (Fig....

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  • ...CCL19 lacks a C-terminal domain extension and may preferentially function chemotactically as a soluble ligand, not haptotactically bound to surfaces, as shown for CCL21 (Weber et al., 2013)....

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  • ...Its only two ligands, CCL19 (previously called ELC) and CCL21 (SLC), are produced constitutively in overlapping microenvironments of lymphoid tissue and are not agonists for other G protein-coupled chemokine receptors (Campbell et al., 1998; Yoshida et al., 1997, 1998a)....

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Journal ArticleDOI
01 Jul 2003-Immunity
TL;DR: Using a murine adoptive transfer system to probe monocyte homing and differentiation in vivo, two functional subsets among murine blood monocytes are identified: a short-lived CX(3)CR1(lo)CCR2(+)Gr1(+) subset that is actively recruited to inflamed tissues and a CX (3) CR1(hi)CCS1-dependent recruitment to noninflamed tissues.

3,307 citations


"International Union of Pharmacology..." refers background in this paper

  • ...In contrast, Cx3cr1 deficiency was protective in a focal cerebral ischemia model with smaller infarcts and reduced inflammation (Denes et al., 2008) and in a mouse model of Alzheimer’s disease (Fuhrmann et al., 2010) where neuronal loss was prevented....

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  • ...However, although CD103 is a convenient marker to identify DCs producing retinoic acid and TGFb in the lamina propria of the small intestine (Coombes et al., 2007), the expression of Cx3cr1 on DCs remains controversial....

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  • ...Initially described as a marker for myeloid-derived mucosal DCs (Hapfelmeier et al., 2008; Niess et al., 2005; Bogunovic et al., 2009; Schulz et al., 2009) that sample the lumen of the small intestine, its selectivity was highly debated (Medina-Contreras et al., 2011) because Cx3cr1+ cells are highly heterogeneous....

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  • ...This has revealed that Cx3cr1 is mainly expressed on monocytes, microglial cells, and NK cells....

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  • ...But interestingly, Cx3cr1 is hardly detected on murine T lymphocytes, whereas subpopulations of both CD4 and CD8 T lymphocytes are CX3CR1+ in human....

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Journal ArticleDOI
20 Jun 1996-Nature
TL;DR: The β-chemokine receptor CC-CKR-5 as mentioned in this paper is a second receptor for NSI primary viruses, which allows env-mediated cell-cell membrane fusion, but it does not allow the fusion of cells from some HIV-1-exposed uninfected individuals.
Abstract: The β-chemokines MIP-1α, MIP-1β and RANTES inhibit infection of CD4+ cells by primary, non-syncytium-inducing (NSI) HIV-1 strains at the virus entry stage, and also block env-mediated cell–cell membrane fusion. CD4+ T cells from some HIV-1-exposed uninfected individuals cannot fuse with NSI HIV-1 strains and secrete high levels of β-chemokines. Expression of the β-chemokine receptor CC-CKR-5 in CD4+ , non-permissive human and non-human cells renders them susceptible to infection by NSI strains, and allows env-mediated membrane fusion. CC-CKR-5 is a second receptor for NSI primary viruses.

3,304 citations


"International Union of Pharmacology..." refers background in this paper

  • ...…and immune effector cells (Tlymphocytes with memory/effector phenotype and NK cells), as well as on peripheral blood-derived CD34+ hematopoietic progenitor cells (Alkhatib et al., 1996; Dragic et al., 1996; Granelli-Piperno et al., 1996; Bleul et al., 1997; Rubbert et al., 1998; Ruiz et al., 1998)....

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  • ...CCR5 is expressed on antigen-presenting cells (both macrophages and DCs) and immune effector cells (Tlymphocytes with memory/effector phenotype and NK cells), as well as on peripheral blood-derived CD34 hematopoietic progenitor cells (Alkhatib et al., 1996; Dragic et al., 1996; Granelli-Piperno et al., 1996; Bleul et al., 1997; Rubbert et al., 1998; Ruiz et al., 1998)....

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Journal ArticleDOI
09 Aug 1996-Cell
TL;DR: A CKR-5 allele present in the human population appears to protect homozygous individuals from sexual transmission of HIV-1 and is suggested to provide a means of preventing or slowing disease progression.

3,110 citations


"International Union of Pharmacology..." refers background in this paper

  • ...Homozygotes are almost totally resistant to HIV-1 infection (Dean et al., 1996; Huang et al., 1996; Liu et al., 1996; Samson et al., 1996b; Zimmerman et al., 1997)....

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