Interspecific gene exchange introduces high genetic variability in crop pathogen
Citations
35 citations
32 citations
Cites result from "Interspecific gene exchange introdu..."
...This new finding is consistent with recent findings from population genomic data studies revealing extensive introgression between Zymoseptoria species [41, 42]....
[...]
27 citations
26 citations
23 citations
Cites background from "Interspecific gene exchange introdu..."
...The extent of genetic divergence between individuals of the same fungal plant pathogen species is also high; hence, reference-based mapping is a challenge, although the diverged regions may not always be associated with virulence [173]....
[...]
References
43,862 citations
20,557 citations
"Interspecific gene exchange introdu..." refers methods in this paper
...In brief, we aligned the Illumina reads of isolates Zt05 and Zt10 to the IPO323 reference with the program bwa v.0.7.15 using the mem algorithm (Li and Durbin 2009) and called variants with the program GATK (McKenna et al. 2010; DePristo et al. 2011)....
[...]
10,056 citations
"Interspecific gene exchange introdu..." refers methods in this paper
...Several methods have been developed to distinguish these two processes from each other, including the ABBA-BABA test (Durand et al. 2011)....
[...]
8,017 citations
1,542 citations