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Introduction to soil microbiology
01 Jan 1961-
TL;DR: In this paper, the biological processes that take place in the soil and their importance to soil fertility, plant growth, and environmental quality are investigated from both descriptive and functional viewpoints, including microbial ecology, the carbon and nitrogen cycles, mineral transformation, and ecological interrelationships.
Abstract: Characterizes soil microflora from descriptive and functional viewpoints; considers the biological processes that take place in the soil and their importance to soil fertility, plant growth, and environmental quality. Deals with the biochemical basis for soil processes, including microbial ecology, the carbon and nitrogen cycles, mineral transformation, and ecological interrelationships.
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TL;DR: In this paper, the authors examine both how the biogeochemistry of the nitrogen cycle could cause limitation to develop, and how nitrogen limitation could persist as a consequence of processes that prevent or reduce nitrogen fixation.
Abstract: The widespread occurrence of nitrogen limitation to net primary production in terrestrial and marine ecosystems is something of a puzzle; it would seem that nitrogen fixers should have a substantial competitive advantage wherever nitrogen is limiting, and that their activity in turn should reverse limitation. Nevertheless, there is substantial evidence that nitrogen limits net primary production much of the time in most terrestrial biomes and many marine ecosystems. We examine both how the biogeochemistry of the nitrogen cycle could cause limitation to develop, and how nitrogen limitation could persist as a consequence of processes that prevent or reduce nitrogen fixation. Biogeochemical mechansism that favor nitrogen limitation include: A number of mechanisms could keep nitrogen fixation from reversing nitrogen limitation. These include: The possible importance of these and other processes is discussed for a wide range of terrestrial, freshwater, and marine ecosystems.
3,332 citations
TL;DR: Genetic manipulation of phosphate-solubilizing bacteria to improve their ability to improve plant growth may include cloning genes involved in both mineral and organic phosphate solubilization, followed by their expression in selected rhizobacterial strains.
2,761 citations
TL;DR: In this paper, the chemistry of submerged soils is discussed and the role of lake, estuarine, and ocean sediments as reservoirs of nutrients for aquatic plants and as sinks for terrestrial wastes.
Abstract: Publisher Summary This chapter discusses the chemistry of submerged soils. The chemical changes in the submerged materials influence: (a) the character of the sediment or soil that forms, (b) the suitability of wet soils for crops, (c) the distribution of plant species around lakes and streams and in estuaries, deltas, and marine flood plains, (d) the quality and quantity of aquatic life, and (e) the capacity of lakes and seas to serve as sinks for terrestrial wastes. The single electrochemical property that serves to distinguish a submerged soil from a well-drained soil is its redox potential. The redox potential of a soil or sediment provides a quick, useful, semiquantitative measure of its oxidation–reduction status. Two recent developments have stimulated interest in the chemistry of submerged soils: the breeding of lowland rice varieties, with a high yield potential, and the pollution of streams, lakes, and seas, by domestic, agricultural, and industrial wastes. The chemistry of submerged soils is valuable: (a) in understanding the soil problems, limiting the performance of high-yielding rice varieties, and (b) in assessing the role of lake, estuarine, and ocean sediments as reservoirs of nutrients for aquatic plants and as sinks for terrestrial wastes.
2,651 citations
TL;DR: Meta-analysis is used to synthesize data on the response of soil respiration, net N mineralization, and aboveground plant productivity to experimental ecosystem warming at 32 research sites representing four broadly defined biomes, including high (latitude or altitude) tundra, low tundara, grassland, and forest.
Abstract: Climate change due to greenhouse gas emissions is predicted to raise the mean global temperature by 1.0–3.5°C in the next 50–100 years. The direct and indirect effects of this potential increase in temperature on terrestrial ecosystems and ecosystem processes are likely to be complex and highly varied in time and space. The Global Change and Terrestrial Ecosystems core project of the International Geosphere-Biosphere Programme has recently launched a Network of Ecosystem Warming Studies, the goals of which are to integrate and foster research on ecosystem-level effects of rising temperature. In this paper, we use meta-analysis to synthesize data on the response of soil respiration, net N mineralization, and aboveground plant productivity to experimental ecosystem warming at 32 research sites representing four broadly defined biomes, including high (latitude or altitude) tundra, low tundra, grassland, and forest. Warming methods included electrical heat-resistance ground cables, greenhouses, vented and unvented field chambers, overhead infrared lamps, and passive night-time warming. Although results from individual sites showed considerable variation in response to warming, results from the meta-analysis showed that, across all sites and years, 2–9 years of experimental warming in the range 0.3–6.0°C significantly increased soil respiration rates by 20% (with a 95% confidence interval of 18–22%), net N mineralization rates by 46% (with a 95% confidence interval of 30–64%), and plant productivity by 19% (with a 95% confidence interval of 15–23%). The response of soil respiration to warming was generally larger in forested ecosystems compared to low tundra and grassland ecosystems, and the response of plant productivity was generally larger in low tundra ecosystems than in forest and grassland ecosystems. With the exception of aboveground plant productivity, which showed a greater positive response to warming in colder ecosystems, the magnitude of the response of these three processes to experimental warming was not generally significantly related to the geographic, climatic, or environmental variables evaluated in this analysis. This underscores the need to understand the relative importance of specific factors (such as temperature, moisture, site quality, vegetation type, successional status, land-use history, etc.) at different spatial and temporal scales, and suggests that we should be cautious in "scaling up" responses from the plot and site level to the landscape and biome level. Overall, ecosystem-warming experiments are shown to provide valuable insights on the response of terrestrial ecosystems to elevated temperature.
1,988 citations
TL;DR: The main functions of rhizosphere microorganisms and how they impact on health and disease are reviewed and several strategies to redirect or reshape the rhizospheric microbiome in favor of microorganisms that are beneficial to plant growth and health are highlighted.
Abstract: Microbial communities play a pivotal role in the functioning of plants by influencing their physiology and development. While many members of the rhizosphere microbiome are beneficial to plant growth, also plant pathogenic microorganisms colonize the rhizosphere striving to break through the protective microbial shield and to overcome the innate plant defense mechanisms in order to cause disease. A third group of microorganisms that can be found in the rhizosphere are the true and opportunistic human pathogenic bacteria, which can be carried on or in plant tissue and may cause disease when introduced into debilitated humans. Although the importance of the rhizosphere microbiome for plant growth has been widely recognized, for the vast majority of rhizosphere microorganisms no knowledge exists. To enhance plant growth and health, it is essential to know which microorganism is present in the rhizosphere microbiome and what they are doing. Here, we review the main functions of rhizosphere microorganisms and how they impact on health and disease. We discuss the mechanisms involved in the multitrophic interactions and chemical dialogues that occur in the rhizosphere. Finally, we highlight several strategies to redirect or reshape the rhizosphere microbiome in favor of microorganisms that are beneficial to plant growth and health.
1,752 citations