Kinetic mechanism for the ability of sulfate reducers to out-compete methanogens for acetate
TL;DR: Difference in substrate affinities can account for the inhibition of methanogenesis from acetate in sulfate-rich environments, where the acetate concentration is well below 1 mM.
Abstract: Methanosarcina barkeri and Desulfobacter postgatei are ubiquitous anaerobic bacteria which grow on acetate or acetate plus sulfate, respectively, as sole energy sources. Their apparent K
s values for acetate were determined and found to be approximately 0.2 mM for the sulfate-reducing bacterium and 3 mM for the methanogenic bacterium. In mixed cell suspensions of the two bacteria (adjusted to equal V
max) the rate of acetate consumption by D. postgatei approached 15-fold the rate of M. barkeri at low acetate concentrations. The apparent inhibition of methanogenesis was of the same order as expected from the different K
s value for acetate. Difference in substrate affinities can thus account for the inhibition of methanogenesis from acetate in sulfate-rich environments, where the acetate concentration is well below 1 mM.
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TL;DR: Sulphate-reducing bacteria are anaerobic microorganisms that use sulphate as a terminal electron acceptor in, for example, the degradation of organic compounds, and are ubiquitous in anoxic habitats.
Abstract: Sulphate-reducing bacteria (SRB) are anaerobic microorganisms that use sulphate as a terminal electron acceptor in, for example, the degradation of organic compounds. They are ubiquitous in anoxic habitats, where they have an important role in both the sulphur and carbon cycles. SRB can cause a serious problem for industries, such as the offshore oil industry, because of the production of sulphide, which is highly reactive, corrosive and toxic. However, these organisms can also be beneficial by removing sulphate and heavy metals from waste streams. Although SRB have been studied for more than a century, it is only with the recent emergence of new molecular biological and genomic techniques that we have begun to obtain detailed information on their way of life.
1,809 citations
Cites background from "Kinetic mechanism for the ability o..."
...Acetate-utilizing sulphate reducers also out-compete acetoclastic methanogens...
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TL;DR: In this paper, the carbon and hydrogen stable isotope composition of the methane as a function of the coexisting carbon dioxide and formation water precursors is used to distinguish two primary methanogenic pathways.
1,756 citations
TL;DR: In this paper, the authors identify and evaluate several constraints on the budget of atmospheric methane, its sources, sinks and residence time, and construct a list of sources and sinks, identities, and sizes.
Abstract: Methane is the most abundant organic chemical in Earth's atmosphere, and its concentration is increasing with time, as a variety of independent measurements have shown. Photochemical reactions oxidize methane in the atmosphere; through these reactions, methane exerts strong influence over the chemistry of the troposphere and the stratosphere and many species including ozone, hydroxyl radicals, and carbon monoxide. Also, through its infrared absorption spectrum, methane is an important greenhouse gas in the climate system. We describe and enumerate key roles and reactions. Then we focus on two kinds of methane production: microbial and thermogenic. Microbial methanogenesis is described, and key organisms and substrates are identified along with their properties and habitats. Microbial methane oxidation limits the release of methane from certain methanogenic areas. Both aerobic and anaerobic oxidation are described here along with methods to measure rates of methane production and oxidation experimentally. Indicators of the origin of methane, including C and H isotopes, are reviewed. We identify and evaluate several constraints on the budget of atmospheric methane, its sources, sinks and residence time. From these constraints and other data on sources and sinks we construct a list of sources and sinks, identities, and sizes. The quasi-steady state (defined in the text) annual source (or sink) totals about 310(±60) × 1012 mol (500(±95) × 1012 g), but there are many remaining uncertainties in source and sink sizes and several types of data that could lead to stronger constraints and revised estimates in the future. It is particularly difficult to identify enough sources of radiocarbon-free methane.
1,513 citations
TL;DR: The aim of this paper is primarily to review the recent literature about the occurrence of both acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of particulate biomass to methane (not wastewater treatment), while this review does not cover the activity of the acetate oxidizing bacteria.
Abstract: Among different conversion processes for biomass, biological anaerobic digestion is one of the most economic ways to produce biogas from various biomass substrates In addition to hydrolysis of polymeric substances, the activity and performance of the methanogenic bacteria is of paramount importance during methanogenesis The aim of this paper is primarily to review the recent literature about the occurrence of both acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of particulate biomass to methane (not wastewater treatment), while this review does not cover the activity of the acetate oxidizing bacteria Both acetotrophic and hydrogenotrophic methanogens are essential for the last step of methanogenesis, but the reports about their roles during this phase of the process are very limited Despite, some conclusions can still be drawn At low concentrations of acetate, normally filamentous Methanosaeta species dominate, eg, often observed in sewage sludge Apparently, high concentrations of toxic ionic agents, like ammonia, hydrogen sulfide (H2S) and volatile fatty acids (VFA), inhibit preferably Methanosaetaceae and especially allow the growth of Methanosarcina species consisting of irregular cell clumps, eg, in cattle manure Thermophilic conditions can favour rod like or coccoid hydrogenotrophic methanogens Thermophilic Methanosarcina species were also observed, but not thermophilic Methanosaetae Other environmental factors could favour hydrogentrophic bacteria, eg, short or low retention times in a biomass reactor However, no general rules regarding process parameters could be derivated at the moment, which favours hydrogenotrophic methanogens Presumably, it depends only on the hydrogen concentration, which is generally not mentioned in the literature
1,018 citations
TL;DR: In this article, the potential rates of both methane production and consumption vary over three orders of magnitude and their distribution is skew, and these rates are weakly correlated with ecosystem type, incubation temperature, in situ aeration, latitude, depth and distance to oxic/anoxic interface.
Abstract: Potential rates of both methane production and methane consumption vary over three orders of magnitude and their distribution is skew. These rates are weakly correlated with ecosystem type, incubation temperature, in situ aeration, latitude, depth and distance to oxic/anoxic interface. Anaerobic carbon mineralisation is a major control of methane pro- duction. The large range in anaerobic CH4:CO2 production rates indicate that a large part of the anaerobically mineralised carbon is used for reduction of electron acceptors, and, hence, is not available for methanogenesis. Consequently, cycling of electron acceptors needs to be studied to understand methane production. Methane and oxygen half saturation constants for methane oxidation vary about one order of magnitude. Potential methane oxidation seems to be correlated with methanotrophic biomass. Therefore, variation in potential methane oxidation could be related to site characteristics with a model of methanotrophic biomass.
851 citations
References
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TL;DR: This article corrects the article on p. 100 in vol.
Abstract: [This corrects the article on p. 100 in vol. 41.].
3,345 citations
Book•
01 Jan 1977
TL;DR: The second edition of this biological reference aimed at undergraduates and graduates is as mentioned in this paper, which covers the structure and mechanism of enzymes, creating a guide to the current understanding of enzymology.
Abstract: This is the second edition of this biological reference aimed at undergraduates and graduates. The book covers the structure and mechanism of enzymes, creating a guide to the current understanding of enzymology.
3,231 citations
"Kinetic mechanism for the ability o..." refers background in this paper
...It is, however, possible that thermodynamics put a constraint on the kinetic parameters involved, since the Haldane equation ( Fersht 1977 ) predicts that the Ks of an enzyme is in part determined by the free energy change associated with the particular reaction....
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TL;DR: Three strains of oval to rodshaped, Gram negative, nonsporing sulfate-reducing bacteria were isolated from brackish water and marine mud samples with acetate as sole electron donor and all three strains grew in simple defined media supplemented with biotin and 4-aminobenzoic acid as growth factors.
Abstract: Three strains (2ac9, 3ac10 and 4ac11) of oval to rod-shaped, Gram negative, nonsporing sulfate-reducing bacteria were isolated from brackish water and marine mud samples with acetate as sole electron donor. All three strains grew in simple defined media supplemented with biotin and 4-aminobenzoic acid as growth factors. Acetate was the only electron donor utilized by strain 2ac9, while the other two strains used in addition ethanol and/or lactate. Sulfate served as electron acceptor and was reduced to H2S. Complete oxidation of acetate to CO2 was shown by stoichiometric measurements with strain 2ac9 in batch cultures using sulfate, sulfite or thiosulfate as electron acceptors. With sulfate an average growth yield of 4.8 g cell dry weight was obtained per mol of acetate oxidized; with sulfite or thiosulfate the growth yield on acetate was about twice as high. None of the strains contained desulfoviridin. In strain 2ac9 cytochromes of the b- and c-type were detected. Strain 2ac9 is described as type strain of the new species and genus, Desulfobacter postgatei.
708 citations
TL;DR: A methanogenic bacterium, commonly seen in digested sludge and referred to as the “fat rod” or Methanobacterium soehngenii, has been enriched to a monoculture and is characterized.
Abstract: A methanogenic bacterium, commonly seen in digested sludge and referred to as the "fat rod" or Methanobacterium soehngenii, has been enriched to a monoculture and is characterized. Cells are gramnegative, non-motile and appear as straight rods with flat ends. They form filaments which can grow to great lengths. The structure of the outer cell envelop is similar to Methanospirillum hungatii. The organism grows on a mineral salt medium with acetate as the only organic component. Acetate is the energy source, and methane is formed exclusively from the methyl group. Acetate and carbon dioxide act as sole carbon source and are assimilated in a molar ratio of about 1.9:1. The reducing equivalents necessary to build biomass from these two precursors are obtained from the total oxidation of some acetate. Hydrogen is not used for methane formation and is not needed for growth. Formate is cleaved into hydrogen and carbon dioxide. Coenzyme M was found to be present at levels of 0.35 nmol per mg of dry cells and F420 amounted to 0.55 microgram per mg protein. The mean generation time was 9 days at 33 degrees C.
512 citations
TL;DR: Results indicate that carbon and electron flow are altered when sulfate is added to sediments, and sulfate-reducing organisms appear to assume the role of methanogenic bacteria in sulfate-containing sediments by utilizing meethanogenic precursors.
Abstract: The effect of sulfate on methane production in Lake Mendota sediments was investigated to clarify the mechanism of sulfate inhibition of methanogenesis. Methanogenesis was shown to be inhibited by the addition of as little as 0.2 mM sulfate. Sulfate inhibition was reversed by the addition of either H2 or acetate. Methane evolved when inhibition was reversed by H2 additions was derived from 14CO2. Conversely, when acetate was added to overcome sulfate inhibition, the evolved methane was derived from [2-14C]acetate. A competition for available H2 and acetate was proposed as the mechanism by which sulfate inhibited methanogenesis. Acetate was shown to be metabolized even in the absence of methanogenic activity. In the presence of sulfate, the methyl position of acetate was converted to CO2. The addition of sulfate to sediments did not result in the accumulation of significant amounts of sulfide in the pore water. Sulfate additions did not inhibit methanogenesis unless greater than 100 mug of free sulfide per ml was present in the pore water. These results indicate that carbon and electron flow are altered when sulfate is added to sediments. Sulfate-reducing organisms appear to assume the role of methanogenic bacteria in sulfate-containing sediments by utilizing methanogenic precursors.
466 citations
"Kinetic mechanism for the ability o..." refers background in this paper
...This has been attributed to competition for the common substrates since in the presence of excess substrates both processes can take place (Mountfort et al. 1980; Oremland and Taylor 1978; Winfrey and Zeikus 1977)....
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