Large-scale phenotyping of 1,000 fungal strains for the degradation of non-natural, industrial compounds
David Navarro,Delphine Chaduli,Sabine Taussac,Laurence Lesage-Meessen,Sacha Grisel,Mireille Haon,Philippe Callac,Régis Courtecuisse,Cony Decock,Joëlle Dupont,Florence Richard-Forget,Jacques Fournier,Jacques Guinberteau,Christian Lechat,Pierre-Arthur Moreau,Laetitia Pinson-Gadais,Bernard Rivoire,Lucile Sage,Stéphane Welti,Marie-Noëlle Rosso,Jean-Guy Berrin,Bastien Bissaro,Anne Favel +22 more
- Vol. 4, Iss: 1, pp 871
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TLDR
The first large-scale phenotyping of more than 1,000 fungal strains with evaluation of their growth and degradation potential towards five industrial, human-designed and recalcitrant compounds, including two synthetic dyes, two lignocellulose-derived compounds and a synthetic plastic polymer is reported.Abstract:
Fungal biotechnology is set to play a keystone role in the emerging bioeconomy, notably to address pollution issues arising from human activities. Because they preserve biological diversity, Biological Resource Centres are considered as critical infrastructures to support the development of biotechnological solutions. Here, we report the first large-scale phenotyping of more than 1,000 fungal strains with evaluation of their growth and degradation potential towards five industrial, human-designed and recalcitrant compounds, including two synthetic dyes, two lignocellulose-derived compounds and a synthetic plastic polymer. We draw a functional map over the phylogenetic diversity of Basidiomycota and Ascomycota , to guide the selection of fungal taxa to be tested for dedicated biotechnological applications. We evidence a functional diversity at all taxonomic ranks, including between strains of a same species. Beyond demonstrating the tremendous potential of filamentous fungi, our results pave the avenue for further functional exploration to solve the ever-growing issue of ecosystems pollution.read more
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PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation
Victor Marques de Oliveira Gambarini,Olga Pantos,Joanne M. Kingsbury,L.D. Weaver,Kim M. Handley,Gavin Lear +5 more
TL;DR: The PlasticDB web application is developed, which comprises a database of microorganisms and proteins reported to biodegrade plastics, and several analytical tools that accept inputs, including gene, genome, metagenome, transcriptomes, metatranscriptomes and taxa table data are implemented.
Journal ArticleDOI
OUP accepted manuscript
TL;DR: PlasticDB as discussed by the authors is a database of microorganisms and proteins reported to biodegrade plastics and associated metadata such as the techniques utilized to assess biodegradation, the environmental source of microbial isolate and presumed thermophilic traits are also reported.
Journal ArticleDOI
The enzyme interactome concept in filamentous fungi linked to biomass valorization.
Antonielle Vieira Monclaro,Caio de Oliveira Gorgulho Silva,Caio de Oliveira Gorgulho Silva,Helder Andrey Rocha Gomes,Leonora Rios de Souza Moreira,Edivaldo Ximenes Ferreira Filho +5 more
TL;DR: In this paper, the concept of interactome is presented as a holistic approach that depicts the interactions among enzymes, substrates, metabolites, and inhibitors, and technological applications are presented for optimizing the interactome at various levels.
Journal ArticleDOI
The enzyme interactome concept in filamentous fungi linked to biomass valorization
TL;DR: In this paper , the concept of interactome is presented as a holistic approach that depicts the interactions among enzymes, substrates, metabolites, and inhibitors, and technological applications are presented for optimizing the interactome at various levels.
Journal ArticleDOI
Discovery of plastic-degrading microbial strains isolated from the alpine and Arctic terrestrial plastisphere
TL;DR: In this article , 34 cold-adapted microbial strains from the plastisphere using plastics buried in alpine and Arctic soils during laboratory incubations as well as plastics collected directly from Arctic terrestrial environments.
References
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Michael E. Himmel,Shi You Ding,David K. Johnson,William S. Adney,Mark R. Nimlos,John W. Brady,Thomas D. Foust +6 more
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A higher-level phylogenetic classification of the Fungi
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TL;DR: A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community.
Journal ArticleDOI
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas,Manfred Binder,Robert Riley,Kerrie Barry,Robert A. Blanchette,Bernard Henrissat,Ángel T. Martínez,Robert Otillar,Joseph W. Spatafora,Jagjit S. Yadav,Andrea Aerts,Isabelle Benoit,Alexander Boyd,Alexis Carlson,Alex Copeland,Pedro M. Coutinho,Ronald P. de Vries,Patricia Ferreira,Keisha Findley,Brian Foster,Jill Gaskell,Dylan Glotzer,Paweł Górecki,Joseph Heitman,Cedar N. Hesse,Chiaki Hori,Kiyohiko Igarashi,Joel A. Jurgens,Nathan M Kallen,Phil Kersten,Annegret Kohler,Ursula Kües,T. K. Arun Kumar,Alan Kuo,Kurt LaButti,Luis F. Larrondo,Erika Lindquist,Albee Y. Ling,Vincent Lombard,Susan Lucas,Taina Lundell,Rachael Martin,David J. McLaughlin,Ingo Morgenstern,Emanuelle Morin,Claude Murat,László Nagy,Matthew J Nolan,Robin A. Ohm,Aleksandrina Patyshakuliyeva,Antonis Rokas,Francisco J. Ruiz-Dueñas,Grzegorz Sabat,Asaf Salamov,Masahiro Samejima,Jeremy Schmutz,Jason C. Slot,Franz J. St John,Jan Stenlid,Hui Sun,Sheng Sun,Khajamohiddin Syed,Adrian Tsang,Ad Wiebenga,Darcy Young,Antonio G. Pisabarro,Daniel C. Eastwood,Francis Martin,Dan Cullen,Igor V. Grigoriev,David S. Hibbett +70 more
TL;DR: Comparative analyses of 31 fungal genomes suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species.
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