MEGA2 : Molecular evolutionary genetics analysis software
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Cites methods from "MEGA2 : Molecular evolutionary gene..."
...MEGA across Computing Platforms (MEGA X) MEGA was first developed for MS DOS in the early 1990s (Kumar et al. 1994) and then upgraded for use in MS Windows eight times, including MEGA 1 to MEGA 6 and MEGA-CC and MEGA-MD (Kumar et al. 2001, 2016)....
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...The SDE can compute many different attributes for columns (sites), including site variability (invariable, variable, singleton, parsimony-informative) and degeneracy (0-, 2- and 4-fold).(8,9) Users can highlight sites with these attributes, one attribute at any given time....
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...1 (Kumar et al. 2001), was employed to both examine relationships among taxa in the profiles and for the subsequent classification of ‘test’ taxa because of its strong track record in the analysis of large species assemblages (Kumar & Gadagkar 2000)....
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References
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"MEGA2 : Molecular evolutionary gene..." refers methods in this paper
...The first version of MEGA (Kumar et al., 1994) made many methods of evolutionary analysis easily accessible to the scientific community for research and education, but it was developed keeping in mind the limited computational resources available on the average personal computer in the early 1990s....
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"MEGA2 : Molecular evolutionary gene..." refers background in this paper
...In the Tree Explorer, users can compute linearized trees (Takezaki et al., 1995) and provide molecular clock calibrations to estimate divergence times for all branching points in the tree displayed....
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"MEGA2 : Molecular evolutionary gene..." refers methods in this paper
...MEGA2 can compute evolutionary distances based on the observed differences in amino acid and nucleotide sequences (reviewed in Nei and Kumar, 2000; Swofford et al., 1996; Page and Holmes, 1998 )....
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...MEGA2 can compute evolutionary distances based on the observed differences in amino acid and nucleotide sequences (reviewed in Nei and Kumar, 2000; Swofford et 1244 c© Oxford University Press 2001 MEGA2 al., 1996; Page and Holmes, 1998)....
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