MIPS: analysis and annotation of proteins from whole genomes
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Cites background from "MIPS: analysis and annotation of pr..."
...A number of interaction databases, including BIND (6), DIP (7), HPRD (8), IntAct (9), MINT (10), and MIPS (11), provide a variety of datasets and analysis tools....
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Cites background or methods from "MIPS: analysis and annotation of pr..."
..., 2004), and Sc (Mewes et al., 2004) and determined the appearance of orthologous Y2H interactions in interaction loop motifs....
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...Next, we merged these data sets with published model organism PPI data from Dm (Giot et al., 2003), Ce (Li et al., 2004), and Sc (Mewes et al., 2004) and determined the appearance of orthologous Y2H interactions in interaction loop motifs....
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1,803 citations
References
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"MIPS: analysis and annotation of pr..." refers methods in this paper
...For instance, Markov-Random-Field clustering methods such as MCL (14) can be applied to detect protein families....
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2,143 citations
"MIPS: analysis and annotation of pr..." refers background in this paper
...[TRANSFAC (3)] and metabolic pathways are either part of the core yeast database or can be retrieved using the BioRS data integration system....
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1,802 citations
"MIPS: analysis and annotation of pr..." refers methods in this paper
...An important contribution of novel experimental techniques during the last few years has been the computational analysis of modules and networks based on the combination of independent types of information (4,5)....
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1,659 citations