Molecular phylogenetics and diagnosis of Anisakis, Pseudoterranova, and Contracaecum from northern Pacific marine mammals.
Citations
47 citations
Cites background from "Molecular phylogenetics and diagnos..."
...Molecular sequence data for complete internal transcribed spacer (ITS-1, 5.8S, ITS-2), D2-D3 expansion segment of the LSU and nearly complete SSU ribosomal DNA, as well as the COI gene of the mitochondria further corroborated the identity of our isolates based on morphology and morphometrics....
[...]
...…et al., 1998; Tandingan De Ley et al., 2002); N93 forward (5′-TTGAACCGGGTAAAAGTCG-3′) and N94 reverse (5′-TTAGTTTCTTTTCCTCCGCT-3′) primers for ITS (Nadler et al., 2005); and forward primer COIF1 (5′-CCTACTATGATTGGTGGTTTTGGTAATTG-3′) and reverse primer COI-R2 (5-GTAGCAGCAGTAAAA TAAGCACG-3′)…...
[...]
...2-3 μl of the genomic template DNA was used in a 25 μl PCR reaction using Illustra PuReTaq Ready-To-Go™ PCR beads (GE Healthcare) under the same PCR conditions and using the same amplification and sequencing primers previously described for D2-D3 and SSU (Blaxter et al., 1998; Tandingan De Ley et al., 2002); N93 forward (5′-TTGAACCGGGTAAAAGTCG-3′) and N94 reverse (5′-TTAGTTTCTTTTCCTCCGCT-3′) primers for ITS (Nadler et al., 2005); and forward primer COIF1 (5′-CCTACTATGATTGGTGGTTTTGGTAATTG-3′) and reverse primer COI-R2 (5-GTAGCAGCAGTAAAA TAAGCACG-3′) for mtCOI (Kanzaki & Futai, 2002)....
[...]
...Four isolates were identified using combined morphology, morphometrics and molecular sequence data for complete internal transcribed spacer (ITS-1, 5.8S, ITS-2), D2-D3 expansion segments of the large subunit (LSU or 28S) and nearly complete small subunit (SSU or 18S) ribosomal DNA....
[...]
..., 2002); N93 forward (5′-TTGAACCGGGTAAAAGTCG-3′) and N94 reverse (5′-TTAGTTTCTTTTCCTCCGCT-3′) primers for ITS (Nadler et al., 2005); and forward primer COIF1 (5′-CCTACTATGATTGGTGGTTTTGGTAATTG-3′) and reverse primer COI-R2 (5-GTAGCAGCAGTAAAA TAAGCACG-3′) for mtCOI (Kanzaki & Futai, 2002)....
[...]
46 citations
46 citations
Cites background or methods from "Molecular phylogenetics and diagnos..."
...Moreover, other genetic/ molecular markers applied to the systematics of Contracaecum have enabled the study of genetic relationships between some Contracaecum spp. from fish-eating birds and those which are parasites of seals (Nascetti et al., 1990; Nadler et al., 2000, 2005)....
[...]
...…al., 1993) from Halichoerus grypus (Genbank EF122211) were included as outgroup to root the Contracaecum phylogenetic trees, based on the relationships of Contracaecum (s. s.). and Pseudoterranova spp., previously demonstrated in ribosomal and mitochondrial DNA analyses (Nadler et al., 2000, 2005)....
[...]
45 citations
Additional excerpts
...…ribosomal DNA (rDNA) (hereafter referred to as ITS markers) to identify larval Anisakis nematodes to species genetically at 2 diagnostic nucleotide sites (Abollo et al., 2003; Nadler et al., 2005; Abe, 2008) with the use of the forward primer 93 and the reverse primer 94 (Nadler et al., 2005)....
[...]
45 citations
References
20,105 citations
"Molecular phylogenetics and diagnos..." refers methods in this paper
...Modeltest Version 3.06 (Posada and Crandall, 1998) was used to compare the fit of nucleotide substitution models for datasets using the Akaike information criterion....
[...]
687 citations
676 citations
373 citations
"Molecular phylogenetics and diagnos..." refers background in this paper
...…A. simplex s. str.) A. simplex C); these represent the 3 known species within the A. simplex species complex and are characterized (along with A. typica and A. ziphidarum) by having type I larvae sensu Berland (1961), which may represent the apomorphic (derived) state within An- NADLER ET AL....
[...]
297 citations