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Molecular Regulation of Antibiotic Biosynthesis in Streptomyces

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TLDR
The physiological signals and regulatory mechanisms may be of practical importance for the activation of the many cryptic secondary metabolic gene cluster pathways revealed by recent sequencing of numerous Streptomyces genomes.
Abstract
SUMMARY Streptomycetes are the most abundant source of antibiotics. Typically, each species produces several antibiotics, with the profile being species specific. Streptomyces coelicolor, the model species, produces at least five different antibiotics. We review the regulation of antibiotic biosynthesis in S. coelicolor and other, nonmodel streptomycetes in the light of recent studies. The biosynthesis of each antibiotic is specified by a large gene cluster, usually including regulatory genes (cluster-situated regulators [CSRs]). These are the main point of connection with a plethora of generally conserved regulatory systems that monitor the organism9s physiology, developmental state, population density, and environment to determine the onset and level of production of each antibiotic. Some CSRs may also be sensitive to the levels of different kinds of ligands, including products of the pathway itself, products of other antibiotic pathways in the same organism, and specialized regulatory small molecules such as gamma-butyrolactones. These interactions can result in self-reinforcing feed-forward circuitry and complex cross talk between pathways. The physiological signals and regulatory mechanisms may be of practical importance for the activation of the many cryptic secondary metabolic gene cluster pathways revealed by recent sequencing of numerous Streptomyces genomes.

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Journal ArticleDOI

Taxonomy, Physiology, and Natural Products of Actinobacteria

TL;DR: Actinobacteria are Gram-positive bacteria with high G+C DNA content that constitute one of the largest bacterial phyla, and they are ubiquitously distributed in both aquatic and terrestrial ecosystems.
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The evolution of genome mining in microbes – a review

TL;DR: Different approaches of mining genomes for secondary metabolites are focused, from detecting biosynthetic genes to resistance based methods and "evo-mining" strategies including a short evaluation of the impact of the development of genome mining methods and tools on the field of natural products and microbial ecology.
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Microbial fuel cells: An overview of current technology

TL;DR: A review of the current field and knowledge in regards to MFCs and the known mechanisms underpinning MFC technology, which allows bacteria to facilitate in electron transfer processes is given in this article.
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Synthetic biology to access and expand nature's chemical diversity.

TL;DR: How advances in synthetic biology — including novel DNA construction technologies, the use of genetic parts for the precise control of expression and for synthetic regulatory circuits — and multiplexed genome engineering can be used to optimize the design and synthesis of pathways that produce natural products are discussed.
References
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Journal ArticleDOI

PAS Domains: Internal Sensors of Oxygen, Redox Potential, and Light

TL;DR: PAS domains are newly recognized signaling domains that are widely distributed in proteins from members of the Archaea and Bacteria and from fungi, plants, insects, and vertebrates that function as input modules in proteins that sense oxygen, redox potential, light, and some other stimuli.
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SMART 7: recent updates to the protein domain annotation resource

TL;DR: ‘metaSMART’ was introduced as a novel subresource dedicated to the exploration and analysis of domain architectures in various metagenomics data sets, covering the complete annotations for SMART and Pfam domains, as well as the complete set of protein descriptions, allowing users to quickly find relevant information.
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Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

TL;DR: The complete nucleotide sequence of the linear chromosome of Streptomyces avermitilis is determined and it is revealed that an internal 6.5-Mb region in the S. avermitILis genome was highly conserved with respect to gene order and content, and contained all known essential genes but showed perfectly asymmetric structure at the oriC center.
Journal ArticleDOI

Regulation of secondary metabolism in streptomycetes

TL;DR: The application of a variety of genetic and molecular approaches is now beginning to reveal fascinating insights into the complex regulatory cascades that govern the biosynthesis of secondary metabolites made by streptomycetes.
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