MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
Citations
2,857 citations
Cites methods from "MZmine 2: Modular framework for pro..."
...A number of excellent methods have been developed to deal with the first two tasks (26,27), which typically yield a list of ‘clean’ MS peaks....
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2,404 citations
Cites methods from "MZmine 2: Modular framework for pro..."
...Users are encouraged to use other dedicated and freely available tools such as XCMSOnline (30) and MZmine (31) for such tasks....
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1,822 citations
1,760 citations
Additional excerpts
...Different open-source and commercial software packages are available for this task (Creek et al., 2011; Hartler et al., 2011; Jankevics et al., 2012; Kamleh et al., 2008; Kawaguchi et al., 2010; Pluskal et al., 2010; Smith et al., 2006)....
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1,530 citations
References
173 citations
"MZmine 2: Modular framework for pro..." refers background or methods or result in this paper
...Two types of errors can be introduced during the alignment process [11]....
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...Table 3 Performance comparison of MZmine 2 alignment methods (right side of the table) to previously published results (left side of the table) obtained using several different software packages [11]...
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...The software has been applied to numerous metabolomic analyses [5-10] and comparative studies with other related software packages have been performed [9,11]....
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...[11], together with their tables of “ground truth” alignments and an evaluation script for calculating the alignment precision and recall values....
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79 citations
"MZmine 2: Modular framework for pro..." refers background in this paper
...The current version of the framework is already suitable for processing large batches of data, both for targeted and/or nontargeted analyses, and has been applied in metabolomic research [13,27]....
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...The scatter plot visualizer (Figure 2F) has proven to be very useful for efficient comparison of multiple samples [13]....
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66 citations
48 citations
"MZmine 2: Modular framework for pro..." refers background in this paper
...The current version of the framework is already suitable for processing large batches of data, both for targeted and/or nontargeted analyses, and has been applied in metabolomic research [13,27]....
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18 citations
"MZmine 2: Modular framework for pro..." refers methods in this paper
...The software has been applied to numerous metabolomic analyses [5-10] and comparative studies with other related software packages have been performed [9,11]....
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