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network link prediction by global silencing of indirect correlations

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TLDR
The fundamental properties of dynamical correlations in networks are exploited to develop a method to silence indirect effects and help translate the abundant correlation data into valuable local information, with applications ranging from link prediction to inferring the dynamical mechanisms governing biological networks.

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Interactome networks and human disease

TL;DR: Why interactome networks are important to consider in biology, how they can be mapped and integrated with each other, what global properties are starting to emerge from interactome network models, and how these properties may relate to human disease are detailed.
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Toward link predictability of complex networks

TL;DR: A quantitative index for measuring link predictability and an algorithm that outperforms state-of-the-art link prediction methods in both accuracy and universality are introduced and a universal structural consistency index is proposed that is free of prior knowledge of network organization.
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Efficient Test and Visualization of Multi-Set Intersections.

TL;DR: It is expected SuperExactTest, a theoretical framework for computing the statistical distributions of multi-set intersections based upon combinatorial theory, will have a broad range of applications in scientific data analysis in many disciplines.
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Data based identification and prediction of nonlinear and complex dynamical systems

TL;DR: The recent advances in this forefront and rapidly evolving field of reconstructing nonlinear and complex dynamical systems from measured data or time series are reviewed, aiming to cover topics such as compressive sensing, noised-induced dynamical mapping, perturbations, reverse engineering, synchronization, inner composition alignment, global silencing and Granger Causality.
References
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Journal ArticleDOI

Emergence of Scaling in Random Networks

TL;DR: A model based on these two ingredients reproduces the observed stationary scale-free distributions, which indicates that the development of large networks is governed by robust self-organizing phenomena that go beyond the particulars of the individual systems.
Journal ArticleDOI

Statistical mechanics of complex networks

TL;DR: In this paper, a simple model based on the power-law degree distribution of real networks was proposed, which was able to reproduce the power law degree distribution in real networks and to capture the evolution of networks, not just their static topology.
Journal ArticleDOI

Cluster analysis and display of genome-wide expression patterns

TL;DR: A system of cluster analysis for genome-wide expression data from DNA microarray hybridization is described that uses standard statistical algorithms to arrange genes according to similarity in pattern of gene expression, finding in the budding yeast Saccharomyces cerevisiae that clustering gene expression data groups together efficiently genes of known similar function.
Book

Networks: An Introduction

Mark Newman
TL;DR: This book brings together for the first time the most important breakthroughs in each of these fields and presents them in a coherent fashion, highlighting the strong interconnections between work in different areas.
Book

Introduction to percolation theory

TL;DR: In this paper, a scaling solution for the Bethe lattice is proposed for cluster numbers and a scaling assumption for cluster number scaling assumptions for cluster radius and fractal dimension is proposed.
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