Optimization and universality of Brownian search in a basic model of quenched heterogeneous media.
Summary (3 min read)
I. INTRODUCTION
- This type of motion is actually abundant in biological cells, where experiments revealed a distinct spatial heterogeneity of the protein diffusivity [60] [61] [62] .
- The authors explain the physical basis of this acceleration compared to a homogeneous search process and quantify an optimal heterogeneity, which minimizes the MFPT to the target.
- Furthermore, the authors show that heterogeneity can be generically beneficial in a random system and is thus a robust means of enhancing the search kinetics.
- In Sec. VII the authors address the global MFPT in systems with a random position of the interface.
II. MINIMAL MODEL FOR SPATIALLY HETEROGENEOUS RANDOM SEARCH
- Even for this minimal model the analysis turns out to be challenging and their exact results reveal a rich behavior with several a priori surprising features.
- The free space between the radii a and R is divided into two regions denoted by subscripts.
- Because of the spherical symmetry of the problem the authors can reduce the analysis to the radial coordinate alone.
- The authors assume that the interface is located between two concentric shells leading to a continuous steady-state probability density profile.
- Returning to their microscopic picture of a signaling protein searching for its target in the nucleus, the heterogeneous diffusivity is due to spatial variations in the long-range hydrodynamic coupling to the motion of the crowders.
III. SUMMARY OF THE MAIN RESULTS
- The additivity principle of the individual MFPTs in Eq. ( 6) is only possible if the excursions of the searcher in the directions away from the target are statistically insignificant.
- The authors would expect that some trajectories starting in the inner region will carry the searcher into the outer region with diffusivity D 2 before the searcher eventually crosses the interface and reaches the target by moving through the inner region with diffusivity D 1 .
FIG. 2. (Color online) Schematic of the equivalence of MFPTs
- In inhomogeneous and homogeneous systems in the case of (a) a searcher starting in the inner region and (b) a searcher starting in the outer region.
- As their analysis shows direct trajectories dominate the MFPT.
- Hence, the optimal heterogeneity is completely determined by the volume fractions and the MFPT properties and hence strictly by the direct trajectories.
- In a setting when the interface position is random and uniformly distributed the authors are interested in the MFPT from a given starting position averaged over the interface position.
- The following is the physical principle underlying the acceleration of search kinetics:.
IV. MEAN FIRST-PASSAGE TIME FOR FIXED INITIAL AND INTERFACE POSITIONS
- Here the left index denotes the dimensionality of the system.
- The qualitative behavior of the MFPT with respect to ϕ, that is, the degree of the heterogeneity, depends on the starting position relative to the interface.
- In contrast, too large values of ϕ prolong the time to reach the interface and cannot be compensated by a faster arrival from the interface towards the target.
- Both the existence and the gain of an optimally heterogeneous search are thus a direct consequence of direct trajectories dominating the MFPT.
V. GLOBAL MEAN FIRST-PASSAGE TIME FOR FIXED INTERFACE POSITION
- The exact expressions for the global MFPT in the various dimensions read EQUATION EQUATION EQUATION ).
- In this case the authors are effectively considering a weighted average of the results presented in Sec. IV.
- Overall, the gain with respect to the homogeneous random walk is larger for higher dimensions, which has the same origin as in the general case discussed above, however here the additional effect of averaging over the initial position enters.
- Away from these limits the gain of the optimal heterogeneity is larger for higher dimensions and can be remarkably large for intermediate interface positions [see the inset of Figs. 5(e) and 5(f)] and increases with decreasing target size.
- Such a spatial heterogeneity could therefore be beneficial for the cell by accelerating the dynamics of signaling molecules.
VI. MEAN FIRST-PASSAGE TIME IN A RANDOM HETEROGENEOUS SYSTEM FOR FIXED INITIAL POSITION
- The authors now address the MFPT problem when the interface position is random in a given realization and uniformly distributed over the radial domain.
- The results for various dimensions are depicted in Figs. 6(d )-6(f).
- Conversely, if starting farther away from the target x 0 will on average lie in the outer region and the search time will be more strongly influenced by the rate of arriving at the interface in each realization.
- An optimal heterogeneity will therefore correspond to a smaller asymmetry of diffusivities in the inner and outer regions.
- The gain of the optimal heterogeneity is shown in the insets of Figs. 6(d)-6(f) and reveals a significant improvement with respect to the standard random walk in every dimension.
VII. GLOBAL MEAN FIRST-PASSAGE TIME IN A RANDOM SYSTEM
- This section completes their study, addressing the global MFPT in a random system.
- The optimal heterogeneity in the different spatial dimensions is obtained in the form EQUATION EQUATION.
- This is expected since the system effectively becomes one dimensional when the ratio of the annulus thickness to the curvature approaches zero.
- The authors should stress here that this gain is achieved under the constraint of a conserved D, which means that they do not introduce any additional resources.
VIII. DISCUSSION AND CONCLUDING REMARKS
- Analyzing a minimal model system capturing the fundamental physical aspects of the problem, the authors obtained exact analytical results for the MFPT of a particle to find the target in various settings.
- Under the constraint of conserved average dynamics, the authors proved the existence of an optimal heterogeneity, which minimizes the MFPT.
- In contrast to conventional search strategies (intermittent or Lévy-stable motion), which have the highest gain in lower dimensions, the heterogeneous search performs best in higher dimensions.
- In addition, even in the presence of quenched spatially disordered heterogeneity, which is often observed in particletracking experiments inside cells [61, 62, [74] [75] [76] , the target search kinetics can be enhanced as well, even if the process starts from a spatially uniform initial distribution of the searching molecules.
- Namely, in a finite system the heavy-tailed waiting-time density between individual jumps in a subdiffusive continuoustime random walk is expected to be exponentially tempered, exhibiting subdiffusion over a transient but long-time scale, which would ultimately terminate with a normal diffusion regime.
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"Optimization and universality of Br..." refers background or methods in this paper
...The efficiency of the search strategy is conventionally quantified via the mean first-passage time (MFPT) defined as the average time a random searcher needs to arrive at the target for the first time [5,27,28,58,59]....
[...]
...Over the years several different search strategies have been studied in the literature, including Brownian motion [8,18,27,28], spatiotemporally decoupled Lévy flights (LFs) [29–34], and coupled Lévy walks (LWs) [35–46] in which the searcher undergoes large relocations with a heavy-tailed length distribution either instantaneously (LFs) or with constant speed (LWs), as well as intermittent search patterns, in which the searcher combines different types of motion [5], for instance, three-dimensional and onedimensional diffusion [18–25,47,48], three-dimensional and two-dimensional diffusion [49,50], or diffusive and ballistic motion [5,8,51–57]....
[...]
671 citations
"Optimization and universality of Br..." refers background or methods in this paper
...Over the years several different search strategies have been studied in the literature, including Brownian motion [8,18,27,28], spatiotemporally decoupled Lévy flights (LFs) [29–34], and coupled Lévy walks (LWs) [35–46] in which the searcher undergoes large relocations with a heavy-tailed length distribution either instantaneously (LFs) or with constant speed (LWs), as well as intermittent search patterns, in which the searcher combines different types of motion [5], for instance, three-dimensional and onedimensional diffusion [18–25,47,48], three-dimensional and two-dimensional diffusion [49,50], or diffusive and ballistic motion [5,8,51–57]....
[...]
...In an intermittent search [5,8,51] persistent ballistic excursions are balanced by compact Brownian phases....
[...]
...de larger than the target and on a scale similar to or smaller than the target [5]....
[...]
...The idea behind search optimization is to find an optimal balance of both more- and less-compact search modes in the given physical setting [5]....
[...]
...The efficiency of the search strategy is conventionally quantified via the mean first-passage time (MFPT) defined as the average time a random searcher needs to arrive at the target for the first time [5,27,28,58,59]....
[...]
627 citations
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Frequently Asked Questions (7)
Q2. What is the advantage of the MFPT?
Because the MFPT is dominated by direct trajectories and the heterogeneity does not affect the compactness of exploring the surrounding space, but instead acts by enhancing or retarding the local dynamics, it performs better for noncompact exploration.
Q3. Why does the optimal search perform better for noncompact exploration of space?
Because heterogeneity acts by enhancing and retarding the local dynamics and does not affect spatial oversampling, it is intuitive that it performs better for noncompact exploration of space.
Q4. What is the MFPT of the heterogeneous system?
That is, in this case when the particle starts in the inner region with diffusivity D1, Eq. (6) reveals that the MFPT of the heterogeneous system is equal to that of a homogeneous system with diffusivity D1 everywhere and is independent of the position of the interface.
Q5. What is the probability of a random walker moving from shell i to shell i?
A random walker located in shell i at time t can either move to shell i + 1 with probability q(i) or to shell i − 1 with probability 1 − q(i).
Q6. Why are the probabilities proportional to the surface areas of the bounding d-dimensional?
Due to the isotropic motion of the random walker, these probabilities are proportional to the respective surface areas of the bounding d-dimensional spherical surfaces at Ri−1 and Ri , that is, q(i) ∼ Rd−1i and 1 − q(i) ∼ Rd−1i−1 .
Q7. Why do the authors only trace the projection of the motion of the searcher onto the radial?
That is, the authors only trace the projection of the motion of the searcher onto the radial coordinate and therefore start with a discrete spacetime nearest-neighbor random walk in between thin concentric spherical shells of equal width R = Ri+1 − Ri as depicted in Fig.