OsiriX: An Open-Source Software for Navigating in Multidimensional DICOM Images
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TLDR
OsiriX was designed for display and interpretation of large sets of multidimensional and multimodality images such as combined PET-CT studies and ensures that all new developments in image processing that could emerge from other academic institutions using these libraries can be directly ported to the OsiriX program.Citations
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3D Slicer as an image computing platform for the Quantitative Imaging Network.
Andriy Fedorov,Reinhard Beichel,Jayashree Kalpathy-Cramer,Julien Finet,Jean-Christophe Fillion-Robin,Sonia Pujol,Christian Bauer,Dominique Jennings,Fiona M. Fennessy,Milan Sonka,John M. Buatti,Stephen R. Aylward,James V. Miller,Steve Pieper,Ron Kikinis +14 more
TL;DR: An overview of 3D Slicer is presented as a platform for prototyping, development and evaluation of image analysis tools for clinical research applications and the utility of the platform in the scope of QIN is illustrated.
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A hitchhiker's guide to diffusion tensor imaging
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Amber L. Simpson,Michela Antonelli,Spyridon Bakas,Michel Bilello,Keyvan Farahani,Bram van Ginneken,Annette Kopp-Schneider,Bennett A. Landman,Geert Litjens,Bjoern H. Menze,Olaf Ronneberger,Ronald M. Summers,Patrick Bilic,Patrick Ferdinand Christ,Richard K. G. Do,Marc J. Gollub,Jennifer Golia-Pernicka,Stephan Heckers,William R. Jarnagin,Maureen McHugo,Sandy Napel,Eugene Vorontsov,Lena Maier-Hein,M. Jorge Cardoso +23 more
TL;DR: A large, curated dataset representative of several highly variable segmentation tasks that was used in a crowd-sourced challenge - the Medical Segmentation Decathlon held during the 2018 Medical Image Computing and Computer Aided Interventions Conference in Granada, Spain.
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Biological imaging software tools
Kevin W. Eliceiri,Michael R. Berthold,Ilya G. Goldberg,Luis Ibanez,B.S. Manjunath,Maryann E. Martone,Robert F. Murphy,Hanchuan Peng,Anne L. Plant,Badrinath Roysam,Nico Stuurman,Jason R. Swedlow,Pavel Tomancak,Anne E. Carpenter +13 more
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High-Resolution Whole-Mount Imaging of Three-Dimensional Tissue Organization and Gene Expression Enables the Study of Phloem Development and Structure in Arabidopsis
Elisabeth Truernit,Hélène Bauby,Bertrand Dubreucq,Olivier Grandjean,John Runions,Julien Barthélémy,Jean-Christophe Palauqui +6 more
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