TL;DR: Estimates of genetic correlations in Rambouillet sheep suggest that a repeated measures model for greasy fleece weight is adequate for making selection decisions.
Abstract: Variance components for greasy fleece weight in Rambouillet sheep were estimated. Greasy fleece weight was modeled either as repeated measure- ments on the same trait or as different traits at different ages. The original data were separated according to the age of the ewe at shearing into three classes; 1 yr, 2 and 3 yr, and older than 3 yr. An animal model was used to obtain estimates of genetic parameters with a REML algorithm. Total numbers of animals in pedi- grees for the different age classes were 696, 729, and 573, respectively, and 822 for the repeated measures model across ages. The animal model included direct genetic, permanent environmental, and residual envi- ronmental random effects and fixed effects for age of
Previous studies have reported estimates of heritabilities and genetic correlations for several traits in sheep (Shelton and Menzies, 1968; Vesely et al., 1970; Coelli et al., 1998).
Days between shearings was used as a covariate.
Okut et al. (1999) estimated the genetic correlations between expressions of genotypes at different ages of animal for wool traits for Columbia, Polypay, Rambouillet, and Targhee sheep.
Materials and Methods
The ewes were representative of the Rambouillet population in Texas.
All lambs were weaned on the same day within a year when lambs averaged approximately 100 d of age.
Fleece weight was divided by number of days from the previous shearing and multiplied by 365.
Numbers of records and unadjusted means and standard deviations by age class of ewes are in Table 1.
For multiple-trait analyses, this model was expanded to include covariances between additive genetic and permanent environmental effects in different age classes but with residual covariances assumed to be zero.
Single-Trait Analyses
Parameter estimates from single-trait analyses by age classes for greasy fleece weight are shown in Table 2.
Except for age of ethe authors class 1, the estimates were the same whether or not days in shearing period was included in the model as a covariate.
Estimates of relative variance due to total (including permanent and residual) environmental effects were .52, .41, and .38, for the last three age classes and .43 for the analysis over all ages.
Estimate of heritability for greasy fleece weight when observations were considered as repeated measurements of the same trait was .57.
The heritability estimate reflects the average of estimates for the three age classes.
Multiple-Trait Analyses
Parameter estimates for two-trait and three-trait analyses for fleece weight are shown in Tables 3 and 4.
Estimates of direct heritability by age class for the three-trait analysis were .42, .50, and .58, respectively.
These estimates were somewhat less than with two-trait analyses, which were somewhat less than with single-trait analyses.
These results also agree with those of Coelli et al. (1998), who reported genetic correlations between 2 yr and older than 2 yr age classes for fleece weight in Australian Merino sheep to be greater than .88.
The genetic correlations among greasy fleece weight in the three age classes indicate that selection for increasing fleece weight at young ages would result in increasing fleece weight at older ages.
Fixed Effects of Number of Lambs Born and Days Between Shearings
These estimates are higher than those of Snowder and Shelton (1988), who reported that Rambouillet ewes that weaned two lambs had .14 kg less greasy fleece weight than did ewes that raised a single lamb.
Ray and Sidwell (1964) reported that the effects of lactation were greater than those of pregnancy in reducing wool production of Navajo and Targhee ewes.
Because records of the number of lambs weaned were not available for this flock, the number of lambs born was the best available predictor of number of lambs weaned.
The estimated effects of producing an additional lamb in the present study were within the range of estimates in the review of Corbett (1979).
This result suggests that the linear adjustment of fleece weight to a constant 365 d is not adequate for the 1-yr-old ethe authors class in this study, perhaps because of the large increases in body weight during the time first fleece is grown.
Implications
Estimates of genetic correlations among genetic expressions of greasy fleece weight at different ages were highly positive.
Thus, greasy fleece weight does not need to be defined into several age classes for genetic evaluation.
Whether a ethe authors produces one or two lambs should be taken into account in genetic evaluations because lamb production does have a significant effect on fleece weight.
This study suggests that a repeated measures model for greasy fleece weight is adequate for genetic evaluation.
Literature Cited
Estimates of genetic and phenotypic parameters of weanling and yearling traits in range Rambouillet ewes.
Variation in wool growth with physiological state.
The relationship of lamb and wool production in range Rambouillet ewes.
TL;DR: Estimates of genetic parameters and observed genetic trends confirm that selective breeding can lead to significant genetic improvement in Menz sheep.
Abstract: Menz sheep are indigenous to the highlands of Ethiopia, and highly valued for their meat and wool production. The area is characterized as a low input mixed barley-sheep production system. In 1998, a selection experiment was set up to evaluate the response of Menz sheep to selection for yearling live weight (WT12) and greasy fleece weight (GFW) combined in an economic index. In this paper, we report the results of this breeding program obtained between 1998 and 2003. Average annual genetic selection responses for WT12 and GFW were 1.506 and 0.043 kg in the selected flock and 0.392 and −0.008 kg in the control flock. Annual genetic trends in the selected flock, estimated by regressing BLUP estimated breeding values on year of birth, were 0.495 ± 0.053 kg for WT12, 0.012 ± 0.002 kg for GFW, and Birr 5.53 ± 0.55 for the aggregate breeding value (1 Ethiopian Birr = 0.115 USD). Corresponding values for the control flock were 0.276 ± 0.065 kg, 0.003 ± 0.002 kg and Birr 2.93 ± 0.69. Correlated responses in birth weight (WT0), weaning weight (WT3), 6-month weight (WT6) and staple length (STPL) in the selected flock were 0.038 ± 0.005 kg, 0.271 ± 0.03 kg, 0.388 ± 0.039 kg and 0.011 ± 0.017 cm, respectively. Heritabilities, estimated by fitting a multitrait individual animal model were 0.464 ± 0.014, 0.477 ± 0.016, 0.514 ± 0.017, 0.559 ± 0.019, 0.393 ± 0.016 and 0.339 ± 0.014 for WT0, WT3, WT6, WT12, GFW and staple length (STPL), respectively. Phenotypic and genetic correlations between all traits were positive, except for STPL and WT12. Estimates of genetic parameters and observed genetic trends confirm that selective breeding can lead to significant genetic improvement in Menz sheep.
TL;DR: The aim of the current study was to estimate genetic parameters for birth weight, weaning weight (WW), yearling weight (YW), average daily gain from birth to weaning (ADG) and greasy fleece weight at first shearing (GFW), which are essential to design a selection programme for Turkish Merino sheep.
Abstract: The aim of the current study was to estimate genetic parameters for birth weight (BW), weaning weight (WW), yearling weight (YW), average daily gain from birth to weaning (ADG) and greasy fleece weight at first shearing (GFW), which are essential to design a selection programme for Turkish Merino sheep. Data and pedigree information of Turkish Merino sheep used in this study were collected at Marmara Animal Breeding Research Institute from 1996 to 2001. Genetic parameters were estimated with single- and two-trait analyses using restricted maximum likelihood (REML) with animal models. Estimates of direct heritability were 0.08 for BW, 0.12 for WW, 0.25 for YW, 0.11 for ADG and 0.08 for GFW. Estimates of maternal heritability were 0.09, 0.04, 0.03 and 0.04 for BW, WW, YW and ADG, respectively. Estimates of maternal permanent environmental variance as a proportion of phenotypic variance were 0.19, 0.08 and 0.09 for BW, WW and ADG, respectively. Estimates of direct genetic correlations among growth traits were positive and ranged from 0.56 to 0.98. GFW had a moderate to high positive direct genetic correlation with BW, WW and ADG but not with YW (0.19). Estimates of the correlation between direct and maternal genetic effects were negative and ranged from −0.63 to −0.92 for growth traits.
TL;DR: The results indicate that selective breeding can lead to significant genetic improvement under low-input systems and marginal environments, and that the most rational and sustainable way to conserve livestock genetic resources is to improve their competitiveness through sustainable breed improvement programs.
Abstract: Twenty percent of the world domestic animal breeds are classified as being “at risk” of extinction. Seventy percent of the mammalian breeds, for which no risk status data are available, are found in the developing world. This is a serious constraint to effective prioritization and planning of sustainable breed conservation measures, including sustainable breeding strategies. The objectives of this thesis were to develop improved approaches to characterization of sheep resources, and sustainable conservation-based sheep breeding strategies under smallholder traditional systems, taking Ethiopia as a case study. Analysis of microsatellite variation showed that geographic isolation is the primary cause of genetic differentiation among Ethiopian sheep breeds. However, there is a strong indication of adaptive divergence in morphological characters. Using a combination of microsatellite analysis and morphological divergence, we propose a classification of Ethiopian sheep into six breed groups and nine breeds. The objective of characterizing animal genetic resources is to facilitate decisions on prioritization in conservation of these resources. Our results show that a maximum-utility-strategy combining threat status, contributions to farmer livelihoods and to genetic diversity of livestock breeds should be adopted to prioritize them for conservation purposes. Such an approach balances the trade-offs between conserving breeds as insurance against future uncertainties and for current sustainable utilization. Selective breeding within indigenous livestock breeds is an option for conserving livestock breeds. Our results indicate that selective breeding can lead to significant genetic improvement under low-input systems and marginal environments. Assessment of farmers’ selective breeding objectives showed that adaptive traits are more important than or as important as production traits, indicating that sustainable animal breeding strategies require a broad definition of breeding objectives that emphasize maintaining adaptation to local circumstances and biodiversity, in addition to profitability. It is concluded that the most rational and sustainable way to conserve livestock genetic resources is to improve their competitiveness through sustainable breed improvement programs (i.e. conservation through use). To this end, community- or village-based selective breeding schemes with full participation of farmers appear to be the best option to start with.
TL;DR: Heritabilities of size traits and growth rate traits, as well as genetic, phenotypic and environmental correlations were estimated at three ages for a captive population of Pacific white shrimp grown indoors to reduce the error caused by unique previous growth conditions on variance components.
Abstract: Heritabilities of size traits and growth rate traits, as well as genetic, phenotypic and environmental correlations were estimated at three ages for a captive population of Pacific white shrimp (Penaeus vannamei) grown indoors A covariate, mean size or mean growth rate during early growth in individual tanks before tagging and mixing, was introduced in the analyses to reduce the error caused by unique previous growth conditions on variance components Heritabilities of size traits increased with age, with the h2 for TL, AL, TWt and Wi1AS being 015, 020, 020 and 022, respectively, at 17 weeks, increasing to 028, 033, 034 and 035 at 29 weeks of age Heritabilities of growth rate traits estimated between consecutive growth periods decreased from the first (h2 for ΔTL 065, ΔAL 071, ΔTWt 063 and ΔWi1AS 084) to the second period (h2 for ΔTL 034, ΔAL 050, ΔTWt 054 and ΔWi1AS 052) Phenotypic correlations were always larger than genetic correlations for both, size and growth rate traits Genetic correlations between size traits within age were high (rG >095), but those between the same size trait at different ages decreased as the age difference increased in spite of a consistently high environmental correlation (rE 080–085) between the same trait at different ages Phenotypic and genetic correlation's between the same growth rate trait at the two different growth periods evaluated were negative or zero (rG TL –026, AL –024, Wi1AS 000) with the exception of total weight (rG TW 035) and the environmental correlations between growth periods were also low (rE 013–032)
TL;DR: It is suggested that the canine model could provide a unique opportunity to identify genes underlying natural HD and hip OA, which are common and debilitating conditions in both dogs and humans.
Abstract: Background
Canine hip dysplasia (HD) is a common polygenic trait characterized by hip malformation that results in osteoarthritis (OA). The condition in dogs is very similar to developmental dysplasia of the human hip which also leads to OA.
Methodology/Principal Findings
A total of 721 dogs, including both an association and linkage population, were genotyped. The association population included 8 pure breeds (Labrador retriever, Greyhounds, German Shepherd, Newfoundland, Golden retriever, Rottweiler, Border Collie and Bernese Mountain Dog). The linkage population included Labrador retrievers, Greyhounds, and their crosses. Of these, 366 dogs were genotyped at ∼22,000 single nucleotide polymorphism (SNP) loci and a targeted screen across 8 chromosomes with ∼3,300 SNPs was performed on 551 dogs (196 dogs were common to both sets). A mixed linear model approach was used to perform an association study on this combined association and linkage population. The study identified 4 susceptibility SNPs associated with HD and 2 SNPs associated with hip OA.
Conclusion/Significance
The identified SNPs included those near known genes (PTPRD, PARD3B, and COL15A1) reported to be associated with, or expressed in, OA in humans. This suggested that the canine model could provide a unique opportunity to identify genes underlying natural HD and hip OA, which are common and debilitating conditions in both dogs and humans.
61 citations
Cites background from "Parameter estimates for greasy flee..."
...0 Mb), whereas across breeds, the extent of LD is less than 10 Kb [18,19,52]....
"Parameter estimates for greasy flee..." refers background in this paper
...The guideline of Robertson (1959) is that, if the genetic correlation between traits is greater than .80, then the trait need not be divided into separate traits defined by age class....
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...If the genetic correlations are less than .80, selection might be more effective if the trait is defined by the environment where it is expressed (Falconer, 1952; Robertson, 1959)....
TL;DR: Formulation of the genotype-environment interaction in terms of a genetic correlation leads easily to a solution of problems connected with selection and a precise answer can be given to the question whether it is better to carry out selection in the environment in which the improved breed is required eventually to live, or in some other environment more favorable to the expression of the desired character.
Abstract: Situations involving an interaction between genotype and environment may be treated by the methods of genetic correlation, if only two different environments are considered. Formulation of the genotype-environment interaction in terms of a genetic correlation leads easily to a solution of problems connected with selection. In this way a precise answer can be given to the question whether it is better to carry out selection in the environment in which the improved breed is required eventually to live, or in some other environment more favorable to the expression of the desired character. Performance in the two environments is regarded as two different characters which are genetically correlated. Selection for one character will then bring about a correlated response of the other character. The magnitude of this correlated response may then be compared with that of the direct response to selection for the desired character itself. The ratio of the correlated to the direct response may be expressed in a simp...
910 citations
"Parameter estimates for greasy flee..." refers background in this paper
...Falconer (1952) suggested that measurements of a genotype in different environments might be considered
1Published as paper no. 12745, Journal Ser., Nebraska Agric....
[...]
...If the genetic correlations are less than .80, selection might be more effective if the trait is defined by the environment where it is expressed (Falconer, 1952; Robertson, 1959)....
"Parameter estimates for greasy flee..." refers background in this paper
...Fogarty (1995) summarized estimates of genetic parameters for live weight, wool, and reproduction traits....
[...]
...Fogarty (1995) reported mean heritabilities of .35 and .36 for greasy and clean fleece weight, respectively, and weighted average genetic and phenotypic correlations between greasy and clean fleece weights of .84 and .88, respectively, in an extensive review of published parameter estimates....
TL;DR: To investigate the effectiveness of four selection protocols for improving reproduction in sheep, nine selection lines and two random-bred control lines for lamb and wool production were evaluated and selection based on independent culling levels was only 85, 67, or 59%, respectively, as effective as that based solely on litter weight weaned for improving litterWeight weaned.
Abstract: To investigate the effectiveness of four selection protocols for improving reproduction in sheep, we evaluated nine selection lines and two random-bred control lines for lamb and wool production. Results were based on 25,026 dam and 30,628 lamb records from Rambouillet (R), Targhee (T), Columbia (C), and Polypay (P) sheep collected from 1976 through 1988. Phenotypic trends over years were positive (P < .01) for most reproductive traits, body weight, wool grade (coarser grades), and lamb weaning weight in nearly all selected lines. Small positive trends for both random-bred control lines indicated there were improvements in management and(or) environment during the period. Small but significant phenotypic declines in fleece weights occurred in most lines, including controls. Substantial genetic gains (P < .01) in litter weight weaned (120 d), net reproductive rate (lambs weaned divided by ewes mated), prolificacy, body weight, and weaning weight were made in nearly all selected lines. There were also small but significant improvements in milk score in most lines. There were significant genetic declines and improvements in fleece weights; however, the average genetic change in fleece weight for lines selected for litter weight weaned was negligible. Genetic improvement in litter weight weaned was attributed approximately 37% to prolificacy, 27% to percentage of lambs weaned, 17% to lamb weaning weight, 12% to fertility, and 7% to ewe viability from breeding to lambing. On average, selection based on independent culling levels (litter weight weaned plus yearling body weight), yearling body weight, or early puberty was only 85, 67, or 59%, respectively, as effective as that based solely on litter weight weaned for improving litter weight weaned. The net value of the average (over all breeds) annual increase in production per ewe resulting from selection for litter weight weaned accumulated over 12 yr to an estimated $11.40 and $21.51 annually for genetic and phenotypic increases, respectively.
75 citations
"Parameter estimates for greasy flee..." refers background in this paper
...Ercanbrack and Knight (1998) estimated genetic trends in lamb and wool production as part of a study to investigate the effectiveness of four selection protocols for improving production....