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Journal ArticleDOI

Pathways of DNA double-strand break repair during the mammalian cell cycle.

15 Aug 2003-Molecular and Cellular Biology (American Society for Microbiology)-Vol. 23, Iss: 16, pp 5706-5715
TL;DR: It is shown here that NHEJ-defective hamster cells (CHO mutant V3 cells) have strongly reduced repair in all cell cycle phases after 1 Gy of irradiation, and HR is particularly important in late S/G2, where both pathways contribute to repair and radioresistance.
Abstract: Little is known about the quantitative contributions of nonhomologous end joining (NHEJ) and homologous recombination (HR) to DNA double-strand break (DSB) repair in different cell cycle phases after physiologically relevant doses of ionizing radiation. Using immunofluorescence detection of -H2AX nuclear foci as a novel approach for monitoring the repair of DSBs, we show here that NHEJ-defective hamster cells (CHO mutant V3 cells) have strongly reduced repair in all cell cycle phases after 1 Gy of irradiation. In contrast, HR-defective CHO irs1SF cells have a minor repair defect in G1, greater impairment in S, and a substantial defect in late S/G2. Furthermore, the radiosensitivity of irs1SF cells is slight in G1 but dramatically higher in late S/G2, while V3 cells show high sensitivity throughout the cell cycle. These findings show that NHEJ is important in all cell cycle phases, while HR is particularly important in late S/G2, where both pathways contribute to repair and radioresistance. In contrast to DSBs produced by ionizing radiation, DSBs produced by the replication inhibitor aphidicolin are repaired entirely by HR. irs1SF, but not V3, cells show hypersensitivity to aphidicolin treatment. These data provide the first evaluation of the cell cycle-specific contributions of NHEJ and HR to the repair of radiation-induced versus replication-associated DSBs.
Citations
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Journal ArticleDOI
TL;DR: It is shown that ATM and the nuclease activity of meiotic recombination 11 are required for the processing of DNA double-strand breaks (DSBs) to generate the replication protein A (RPA)-coated ssDNA that is needed for ATR recruitment and the subsequent phosphorylation and activation of Chk1.
Abstract: It is generally thought that the DNA-damage checkpoint kinases, ataxia-telangiectasia mutated (ATM) and ATM- and Rad3-related (ATR), work independently of one another. Here, we show that ATM and the nuclease activity of meiotic recombination 11 (Mre11) are required for the processing of DNA double-strand breaks (DSBs) to generate the replication protein A (RPA)-coated ssDNA that is needed for ATR recruitment and the subsequent phosphorylation and activation of Chk1. Moreover, we show that efficient ATM-dependent ATR activation in response to DSBs is restricted to the S and G2 cell cycle phases and requires CDK kinase activity. Thus, in response to DSBs, ATR activation is regulated by ATM in a cell-cycle dependent manner.

1,097 citations

Journal ArticleDOI
04 Feb 2010-Leukemia
TL;DR: Although the emphasis is on γ-radiation-induced γH2AX foci, the effects of other genotoxic insults including exposure to ultraviolet rays, oxidative stress and chemical agents are also discussed.
Abstract: Phosphorylation of the Ser-139 residue of the histone variant H2AX, forming gammaH2AX, is an early cellular response to the induction of DNA double-strand breaks. Detection of this phosphorylation event has emerged as a highly specific and sensitive molecular marker for monitoring DNA damage initiation and resolution. Further, analysis of gammaH2AX foci has numerous other applications including, but not limited to, cancer and aging research. Quantitation of gammaH2AX foci has also been applied as a useful tool for the evaluation of the efficacy of various developmental drugs, particularly, radiation modifying compounds. This review focuses on the current status of gammaH2AX as a marker of DNA damage and repair in the context of ionizing radiation. Although the emphasis is on gamma-radiation-induced gammaH2AX foci, the effects of other genotoxic insults including exposure to ultraviolet rays, oxidative stress and chemical agents are also discussed.

1,023 citations

Journal ArticleDOI
TL;DR: A model in which chromatin restructuring mediated by H2AX phosphorylation serves to concentrate DNA repair/signaling factors and/or tether DNA ends together, which could explain the pleotropic phenotypes observed in its absence is suggested.

986 citations

Journal ArticleDOI
TL;DR: This introductory review will delineate mechanisms of DNA damage and the counteracting repair/tolerance pathways to provide insights into the molecular basis of genotoxicity in cells that lays the foundation for subsequent articles in this issue.
Abstract: Living organisms are continuously exposed to a myriad of DNA damaging agents that can impact health and modulate disease-states. However, robust DNA repair and damage-bypass mechanisms faithfully protect the DNA by either removing or tolerating the damage to ensure an overall survival. Deviations in this fine-tuning are known to destabilize cellular metabolic homeostasis, as exemplified in diverse cancers where disruption or deregulation of DNA repair pathways results in genome instability. Because routinely used biological, physical and chemical agents impact human health, testing their genotoxicity and regulating their use have become important. In this introductory review, we will delineate mechanisms of DNA damage and the counteracting repair/tolerance pathways to provide insights into the molecular basis of genotoxicity in cells that lays the foundation for subsequent articles in this issue. Environ. Mol. Mutagen. 58:235-263, 2017. © 2017 Wiley Periodicals, Inc.

954 citations


Cites background from "Pathways of DNA double-strand break..."

  • ...Both of these E3 ligases ubiquitinate H2AX, which then serves as a docking site for 53BP1 and BRCA1....

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  • ...…ATM activation, targeted phosphorylation of H2AX, chromatin PARylation, MDC1 recruitment and finally recruitment of 53BP1 and BRCA1 [Rogakou et al., 1998; Rothkamm et al., 2003; Gottschalk et al., 2009; Chou et al., 2010; Lukas et al., 2011; Price and D’Andrea, 2013; Liu et al., 2014]....

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  • ...Interestingly, both 53BP1 and BRCA1 exhibit an antagonistic influence on each other and 53BP1 depletion rescues embryonic lethal- ity of BRCA1 null mice [Xie et al., 2007; Cao et al., 2009; Bunting et al., 2010]....

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  • ...In the S/G2 phase where HR is predominant, BRCA1 (recruited by ubiquitinated chromatin) successfully counteracts 53BP1 and initiates ubiquitination of the downstream component, CtIP [Yu et al., 2006; Chapman et al., 2012]....

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  • ...Chromatin modification is the first event that registers the presence of a DSB and triggers a cascade of events including ATM activation, targeted phosphorylation of H2AX, chromatin PARylation, MDC1 recruitment and finally recruitment of 53BP1 and BRCA1 [Rogakou et al., 1998; Rothkamm et al., 2003; Gottschalk et al., 2009; Chou et al., 2010; Lukas et al., 2011; Price and D’Andrea, 2013; Liu et al., 2014]....

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Journal ArticleDOI
TL;DR: In this article, the authors discuss current progress toward developing programmable nuclease-based therapies as well as future prospects and challenges, and discuss the potential to directly correct genetic mutations in affected tissues and cells to treat diseases that are refractory to traditional therapies.
Abstract: Recent advances in the development of genome editing technologies based on programmable nucleases have substantially improved our ability to make precise changes in the genomes of eukaryotic cells. Genome editing is already broadening our ability to elucidate the contribution of genetics to disease by facilitating the creation of more accurate cellular and animal models of pathological processes. A particularly tantalizing application of programmable nucleases is the potential to directly correct genetic mutations in affected tissues and cells to treat diseases that are refractory to traditional therapies. Here we discuss current progress toward developing programmable nuclease–based therapies as well as future prospects and challenges.

942 citations

References
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Journal ArticleDOI
TL;DR: In this paper, a histone H2AX species that has been phosphorylated specifically at serine 139 was found to be a major component of DNA double-stranded break.

5,132 citations

Journal ArticleDOI
17 May 2001-Nature
TL;DR: This review summarizes the main DNA caretaking systems and their impact on genome stability and carcinogenesis.
Abstract: The early notion that cancer is caused by mutations in genes critical for the control of cell growth implied that genome stability is important for preventing oncogenesis. During the past decade, knowledge about the mechanisms by which genes erode and the molecular machinery designed to counteract this time-dependent genetic degeneration has increased markedly. At the same time, it has become apparent that inherited or acquired deficiencies in genome maintenance systems contribute significantly to the onset of cancer. This review summarizes the main DNA caretaking systems and their impact on genome stability and carcinogenesis.

3,898 citations


"Pathways of DNA double-strand break..." refers background in this paper

  • ...If left unrepaired, DSBs can result in permanent cell cycle arrest, induction of apoptosis, or mitotic cell death caused by loss of genomic material (37); if repaired incorrectly, they can lead to carcinogenesis through translocations, inversions, or deletions (21, 67)....

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Journal ArticleDOI
TL;DR: One such compound, 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one, LY294002, completely and specifically abolished PtdIns 3-kinase activity, which may be beneficial in the treatment of proliferative diseases as well as in elucidating the biological role of the kinase in cellular proliferation and growth factor response.

3,349 citations


"Pathways of DNA double-strand break..." refers background in this paper

  • ...2B), we incubated cells from 30 min before until 30 min after irradiation in the presence of 200 M phosphatidylinositol 3-kinase inhibitor 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one (LY294002) (68)....

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  • ...Therefore, cells were incubated in the presence of the phosphatidylinositol 3-kinase inhibitor LY294002 (68), which inactivates DNA-PKcs....

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Journal ArticleDOI
TL;DR: The results offer direct visual confirmation that γ-H2AX forms en masse at chromosomal sites of DNA double-strand breaks and suggest the possible existence of units of higher order chromatin structure involved in monitoring DNA integrity.
Abstract: The loss of chromosomal integrity from DNA double-strand breaks introduced into mammalian cells by ionizing radiation results in the specific phosphorylation of histone H2AX on serine residue 139, yielding a specific modified form named γ-H2AX. An antibody prepared to the unique region of human γ-H2AX shows that H2AX homologues are phosphorylated not only in irradiated mammalian cells but also in irradiated cells from other species, including Xenopus laevis, Drosophila melanogaster, and Saccharomyces cerevisiae. The antibody reveals that γ-H2AX appears as discrete nuclear foci within 1 min after exposure of cells to ionizing radiation. The numbers of these foci are comparable to the numbers of induced DNA double-strand breaks. When DNA double-strand breaks are introduced into specific partial nuclear volumes of cells by means of a pulsed microbeam laser, γ-H2AX foci form at these sites. In mitotic cells from cultures exposed to nonlethal amounts of ionizing radiation, γ-H2AX foci form band-like structures on chromosome arms and on the end of broken arms. These results offer direct visual confirmation that γ-H2AX forms en masse at chromosomal sites of DNA double-strand breaks. The results further suggest the possible existence of units of higher order chromatin structure involved in monitoring DNA integrity.

2,451 citations


"Pathways of DNA double-strand break..." refers background or methods in this paper

  • ...The induction and repair of individual IR-induced DSBs in * Corresponding author....

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  • ...Here we used -H2AX focus formation to quantify the repair of IR-induced DSBs. Initial studies showed a close relationship between the number of -H2AX foci and the number of expected DSBs after treatment with IR (46)....

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  • ...This finding is the first direct demonstration of a contribution of HR to the repair of IR-induced DSBs....

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  • ...Thus, the relative importance of HR in repairing IR-induced DSBs increases from G1 through S and into late S/G2....

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  • ...In our laboratory, the induction and repair of IR-induced DSBs in primary human fibroblasts in the G1 phase were studied by examining -H2AX focus formation in parallel with PFGE assays (49)....

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Journal ArticleDOI
TL;DR: Evidence is presented that foci of γ-H2AX (a phosphorylated histone), detected by immunofluorescence, are quantitatively the same as DSBs and are capable of quantifying the repair of individual D SBs, allowing the investigation of DSB repair after radiation doses as low as 1 mGy, an improvement by several orders of magnitude over current methods.
Abstract: DNA double-strand breaks (DSBs) are generally accepted to be the most biologically significant lesion by which ionizing radiation causes cancer and hereditary disease. However, no information on the induction and processing of DSBs after physiologically relevant radiation doses is available. Many of the methods used to measure DSB repair inadvertently introduce this form of damage as part of the methodology, and hence are limited in their sensitivity. Here we present evidence that foci of γ-H2AX (a phosphorylated histone), detected by immunofluorescence, are quantitatively the same as DSBs and are capable of quantifying the repair of individual DSBs. This finding allows the investigation of DSB repair after radiation doses as low as 1 mGy, an improvement by several orders of magnitude over current methods. Surprisingly, DSBs induced in cultures of nondividing primary human fibroblasts by very low radiation doses (≈1 mGy) remain unrepaired for many days, in strong contrast to efficient DSB repair that is observed at higher doses. However, the level of DSBs in irradiated cultures decreases to that of unirradiated cell cultures if the cells are allowed to proliferate after irradiation, and we present evidence that this effect may be caused by an elimination of the cells carrying unrepaired DSBs. The results presented are in contrast to current models of risk assessment that assume that cellular responses are equally efficient at low and high doses, and provide the opportunity to employ γ-H2AX foci formation as a direct biomarker for human exposure to low quantities of ionizing radiation.

1,604 citations


"Pathways of DNA double-strand break..." refers background or methods in this paper

  • ...PFGE....

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  • ...Importantly, G1phase HR-defective irs1SF cells had almost normal DSB repair kinetics for both -H2AX and PFGE end points....

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  • ...Because cell survival after aphidicolin treatment is also reduced the most in irs1SF cells, it appears that aphidicolin-induced DSBs are primarily repaired by HR. DSBs arising from replication fork blockage after UV irradiation result in -H2AX focus formation (31, 71), and PFGE measurements show that aphidicolin induces DSBs specifically during the S phase (50)....

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  • ...By using -H2AX focus analysis as an approach for DSB repair measurements, Rothkamm and Löbrich conducted the first study of DSB repair in mammalian cells by using physiologically relevant radiation doses (49)....

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  • ...In our laboratory, the induction and repair of IR-induced DSBs in primary human fibroblasts in the G1 phase were studied by examining -H2AX focus formation in parallel with PFGE assays (49)....

    [...]