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Journal ArticleDOI

Perennial Biomass Grasses and the Mason–Dixon Line: Comparative Productivity across Latitudes in the Southern Great Plains

TL;DR: In this paper, the authors quantify latitudinal variation in production of representative upland switchgrass ecotypes (Panicum virgatum L.) and Miscanthus (Miscanthus × giganteus J. M. Greef & Deuter ex Hodk), and investigate the environmental factors affecting yield variation.
Abstract: Understanding latitudinal adaptation of switchgrass (Panicum virgatum L.) and Miscanthus (Miscanthus × giganteus J. M. Greef & Deuter ex Hodk. & Renvoize) to the southern Great Plains is key to maximizing productivity by matching each grass variety to its optimal production environment. The objectives of this study were: (1) to quantify latitudinal variation in production of representative upland switchgrass ecotypes (Blackwell, Cave-in-Rock, and Shawnee), lowland switchgrass ecotypes (Alamo, Kanlow), and Miscanthus in the southern half of the US Great Plains and (2) to investigate the environmental factors affecting yield variation. Leaf area and yield were measured on plots at 10 locations in Missouri, Arkansas, Oklahoma, and Texas. More cold winter days led to decreased subsequent Alamo switchgrass yields and increased subsequent upland switchgrass yields. More hot-growing season days led to decreased Kanlow and Miscanthus yields. Increased drought intensity also contributed to decreased Miscanthus yields. Alamo switchgrass had the greatest radiation use efficiency (RUE) with a mean of 4.3 g per megajoule intercepted PAR and water use efficiency (WUE) with a mean of 4.5 mg of dry weight per gram of water transpired. The representative RUE values for other varieties ranged from 67 to 80 % of Alamo’s RUE value and 67 to 87 % of Alamo’s WUE. These results will provide valuable inputs to process-based models to realistically simulate these important perennial grasses in this region and to assess the environmental impacts of production on water use and nutrient demands. In addition, it will also be useful for landowners and companies choosing the most productive perennial grasses for biofuel production.

Summary (1 min read)

Jump to: [Introduction][Methods][Results] and [Discussion]

Introduction

  • Switchgrass (Panicum virgatum L.) and Miscanthus×giganteus J. M. Greef & Deuter ex Hodk. & Renvoize (hereafter referred to asMiscanthus) represent two primary plant species of interest for bioenergy production in the USA.
  • Casler et al. [3–5] described latitudinal and longitudinal variation in switchgrass in the northern Great Plains.
  • When upland ecotypes (i.e., Blackwell, Cave-in-Rock, and Shawnee) are grown in the south, they remain shorter and flower earlier thus decreasing their dry matter yields.
  • Switchgrass water use efficiency (WUE), the balance of carbon assimilated per unit of water transpired, has been linked to higher yields.

Methods

  • In 2010, plots at an additional site, Booneville, AR, were also established.
  • For switchgrass ecotypes, 0.5 m of a row was harvested, while with Miscanthus 1.0 m of a row (one plant) was harvested.
  • These values of FIPAR consisted of multiple measurements with the light sensor moving parallel to the row, in the area from mid-row to mid-row.
  • High temperature effects were estimated by determining the number of days with temperatures exceeding 32 °C during each growing season.
  • Next, the new PCA variables were used in a multiple regression to analyze the ecotype, environment, and ecotype×environment interactions as predictors of yield.

Results

  • Yearly Biomass Yield and Leaf Area Overall, yearly biomass yield and LAI increased between the second and third year after establishment at all sites.
  • Cold temperatures during the previous winter were positively correlated with yields in the third year for Kanlow and the Upland ecotypes (Table 6 and Fig. 6).
  • The last model with all ecotypes, environmental variables, and ecotype×environment interactions had an R2 of 0.80 (p<0.001).
  • Again, none of the other variables were significant in either year.
  • The overall mean RUE for Alamo for the higher groups of values was 4.35 (Table 8), with values of the upland types and Kanlow being 72–78 % of Alamo’s value and the mean for Miscanthus being 68 % of Alamo’s value (Table 8).

Discussion

  • There appeared to be a breakpoint in adaptation regions of these species and ecotypes, roughly corresponding to the Missouri Compromise Line, an extension of the Mason– Dixon line, that forms the border between Missouri and Arkansas.
  • For Miscanthus in year 3, only the two most northern Missouri sites were high yielding.
  • In the shortgrass steppe of Colorado, a mixture of cool-season and warmseason grasses (including blue grama) had WUE values of 1.0–4.5 mgg−1 [26].
  • This study provided valuable results for various switchgrass ecotypes andMiscanthus related to understanding adaptation to various latitudes in the southern portion of the USA.
  • Such improved simulations will allow rapid assessment of resource utilization (water and nutrients) under the diverse climatic conditions and soils in this and similar regions.

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University of Nebraska - Lincoln University of Nebraska - Lincoln
DigitalCommons@University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln
Publications from USDA-ARS / UNL Faculty
U.S. Department of Agriculture: Agricultural
Research Service, Lincoln, Nebraska
2013
Perennial Biomass Grasses and the Mason–Dixon Line: Perennial Biomass Grasses and the Mason–Dixon Line:
Comparative Productivity across Latitudes in the Southern Great Comparative Productivity across Latitudes in the Southern Great
Plains Plains
Jim R. Kiniry
USDA-ARS
, Jim.Kiniry@ars.usda.gov
L. C. Anderson
University of Texas
M.-V. V. Johnson
USDA-NRCS
, mvjohnson@usgs.gov
K. D. Behrman
USDA-ARS
, kate.behrman@gmail.com
M. Brakie
USDA-NRCS East Texas Plant Materials Center
, Melinda.Brakie@tx.usda.gov
See next page for additional authors
Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub
Kiniry, Jim R.; Anderson, L. C.; Johnson, M.-V. V.; Behrman, K. D.; Brakie, M.; Burner, D.; Cordsiemon, R. L.;
Fay, P. A.; Fritschi, F. B.; Houx, J. H. III; Hawkes, C.; Juenger, T.; Kaiser, J.; Keitt, T. H.; Lloyd-Reilley, J.; Maher,
S.; Raper, R.; Scott, A.; Shadow, A.; West, C.; Wu, Y.; and Zibilske, L., "Perennial Biomass Grasses and the
Mason–Dixon Line: Comparative Productivity across Latitudes in the Southern Great Plains" (2013).
Publications from USDA-ARS / UNL Faculty
. 1271.
https://digitalcommons.unl.edu/usdaarsfacpub/1271
This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research
Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in
Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of
Nebraska - Lincoln.

Authors Authors
Jim R. Kiniry, L. C. Anderson, M.-V. V. Johnson, K. D. Behrman, M. Brakie, D. Burner, R. L. Cordsiemon, P. A.
Fay, F. B. Fritschi, J. H. Houx III, C. Hawkes, T. Juenger, J. Kaiser, T. H. Keitt, J. Lloyd-Reilley, S. Maher, R.
Raper, A. Scott, A. Shadow, C. West, Y. Wu, and L. Zibilske
This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/
usdaarsfacpub/1271

Perennial Biomass Grasses and the MasonDixon Line:
Comparative Productivity across Latitudes in the Southern
Great Plains
J. R. Kiniry & L. C. Anderson & M.-V. V. Johnson &
K. D. Behrman & M. Brakie & D. Burner &
R. L. Cordsiemon & P. A. Fay & F. B. Fritschi &
J. H. Houx III & C. Hawkes & T. Juenger & J. Kaiser &
T. H. Keitt & J. Lloyd-Reilley & S. Maher & R. Raper &
A. Scott & A. Shadow & C. West & Y. Wu & L. Zibilske
Published online: 23 September 2012
#
Springer Science+Business Media, LLC (outside the USA) 2012
Abstract Understanding latitudinal adaptation of switch-
grass (Panicum virgatum L.) and Miscanthus (Miscanthus×
giganteus J. M. Greef & Deuter ex Hodk. & Renvoize) to the
southern Great Plains is key to maximizing productivity by
matching each grass variety to its optimal production environ-
ment. The objectives of this study were: (1) to quantify lati-
tudinal variation in production of representative upland
switchgrass ecotypes (Blackwell, Cave-in-Rock, and
Shawnee), lowland switchgrass ecotypes (Alamo, Kanlow),
and Miscanthus in the southern half of the US Great Plains
and (2) to investigate the environmental factors affecting yield
variation. Leaf area and yield were measured on plots at 10
locations in Missouri, Arkansas, Oklahoma, and Texas. More
cold winter days led to decreased subsequent Alamo switch-
grass yields and increased subsequent upland switchgrass
yields. More hot-growing season days led to decreased
Kanlow and Miscanthus yields. Increased drought intensity
also contributed to decreased Miscanthus yields. Alamo
Electronic supplementary material The online version of this article
(doi:10.1007/s12155-012-9254-7) contains supplementary material,
which is available to authorized users.
J. R. Kiniry (*)
:
K. D. Behrman
:
P. A. Fay
USDA-ARS,
Temple, TX, USA
e-mail: Jim.Kiniry@ARS.USDA.GOV
L. C. Anderson
:
K. D. Behrman
formerly with University of Texas,
Austin, TX, USA
M.-V. V. Johnson
USDA-NRCS,
Temple, TX, USA
M. Brakie
:
A. Shadow
USDA-NRCS East Texas Plant Materials Center,
Nacogdoches, TX, USA
D. Burner
USDA-ARS,
Houoma, LA, USA
D. Burner
formerly USDA-ARS,
Booneville, AR, USA
R. Raper
Oklahoma State University, Stillwater, formerly USDA-ARS,
Booneville, AR, USA
R. L. Cordsiemon
:
J. Kaiser
USDA-NRCS Elsberry Plant Materials Center,
Elsberry, MO, USA
F. B. Fritschi
:
J. H. Houx III
University of Missouri,
Columbia, MO, USA
C. Hawkes
:
T. Juenger
:
T. H. Keitt
University of Texas,
Austin, TX, USA
J. Lloyd-Reilley
:
S. Maher
USDA-NRCS Kika de la Garza Plant Materials Center,
Kingsville, TX, USA
A. Scott
Rio Farms, Inc.,
Monte Alto, TX, USA
Bioenerg. Res. (2013) 6:276291
DOI 10.1007/s12155-012-9254-7
This article is a U.S. government work, and is not subject to copyright in the United States.

switchgrass had the greatest radiation use efficiency (RUE)
with a mean of 4.3 g per megajoule intercepted PAR and water
use efficiency (WUE) with a mean of 4.5 mg of dry weight per
gram of water transpired. The representative RUE values for
other varieties ranged from 67 to 80 % of Alamos RUE value
and 67 to 87 % of Alamos WUE. These results will provide
valuable inputs to process-based models to realistically simu-
late these important perennial grasses in this region and to
assess the environmental impacts of production on water use
and nutrient demands. In addition, it will also be useful for
landowners and compan ies choosing the most productive
perennial grasses for biofuel production.
Keywords Biofuel grasses
.
Switchgrass
.
Miscanthus
.
Simulation modeling
Introduction
Switchgrass (Panicum virgatum L.) and Miscanthus×gigan-
teus J. M. Greef & Deuter ex Hodk. & Renvoize (hereafter
referred to as Miscanthus) represent two primary plant species
of interest for bioenergy production in the USA. Both have
repeatedly shown promise as being highly productive peren-
nial grasses adapted to either marginal or prime agricultural
soils. Switchgrass, with its high variation in ecotypes, can be
grown as far south as northern Mexico and as far north as
southern Canada. The sustainability and yield stability of
switchgrass biomass production will depend on understanding
the adaptation of representative ecotypes to different environ-
ments. Widespread reports of Miscanthus grown in the
Midwest have spurred interest in it as an alternative to switch-
grass. However, no Miscanthus yields have been reported for
the southern Great Plains. It is therefore imperative to quantify
productivity of these biofuel grasses in this region of the USA.
If biofuel production is targeted for marginal soils, identi-
fying the species and ecotypes adapted to these conditions
also is extremely important.
There are many environmental gradients that transverse the
southern two thirds of the US Great Plains. In the often-cited
biofuel crop regional adaptation map [30] (Electronic supple-
mentary material (ESM) Fig. S1), there is a break in adapta-
tion regions running east to west through eastern Oklahoma
and western Arkansas. There are north-to-south gradients in
the average daily temperature of the coldest quarter (ESM Fig.
S2a) and in average daily temperature of the warmest quarter
(ESM Fig. S2b) and east-to-west gradients annual precipita-
tion (ESM Fig. S2c). Casler et al. [35] described latitudinal
and longitudinal variation in switchgrass in the northern Great
Plains. The major abiotic factors that regulate adaptation of
switchgrass populations are photoperiodism, heat tolerance,
cold or freez ing tolerance, and precipitation [ 5, 25].
Furthermore, Vogel et al. [34] used climate and ecoregions
to develop plant adaptation regions for switchgrass ecotypes.
Previous switchgrass studies have shown variable responses
to photoperiod manipulation depending on the ecotype. In the
central Great Plains, switchgrass ecotypes from the Dakotas
(upland ecotypes) flower and mature early and are short in
stature, whereas those from Texas and Oklahoma (lowland
ecotypes) flower late and are tall [9, 24]. When upland
(northern) ecotypes (i.e., Blackwell, Cave-in-Rock, and
Shawnee) are grown in the south, they remain shorter and
flower earlier thus decreasing their dry matter yields.
However, when lowland (southern) ecotypes (i.e., Alamo)
a
re planted further north, they flower later and are taller, thus
having more stable yields than upland ecotypes. The photope-
riod response has also been reported to be responsible for
winter survival. Southern types moved too far north mature
too late and do not survive late season winter freezes [34].
Switchgrass water use efficiency (WUE), the balance of
carbon assimilated per unit of water transpired, has been
linked to higher yields. While transpiration and photosynthe-
sis are closely related to yield, WUE is most closely linked to
higher biomass yield [37]. Measurements of WUE on single
leaves indicate that switchgrass, as expected, uses relatively
low levels of water, and that the highest yielding switchgrass
varieties have the highest water use efficiencies [23].
In this study, five switchgrass ecotypes and Miscanthus
were planted in replicated field trials at 10 locations in Texas,
Arkansas, Oklahoma, and Missouri. The main objectives
were to: (1) describe and identify the most productive (high-
est biomass and leaf area) perennial species and ecotype at
each location; (2) determine the impact of photoperiod, pre-
cipitation, high temperature stress during the growing season,
and low temperature stress during the preceding winter on
yield; (3) determine the radiation use efficiency (RUE) and
WUE of these perennial grasses in these representative sites
in the central and southern Great Plains to allow realistic
simulation of their production with process-based simulation
models. Proce ss-based models such as Agricultural Land
Management Alternatives with Numerical Assessment
Criteria (ALMANAC) [17], Environmental Policy Integrated
Climate (SWAT) [35, 36], and Soil and Water Assessment
Tool (EPIC) [2] provide realistic simulation of biofuel plant
species for assessing management practices that maximize
C. West
Texas Tech University, Lubbock,
formerly with University of Arkansas,
Fayetteville, AR, USA
Y. W u
Oklahoma State University,
Stillwater, OK, USA
L. Zibilske
formerly with USDA-ARS,
Weslaco, TX, USA
Bioenerg. Res. (2013) 6:276291 277

production and minimize environmental impact. Process-
based simulation of these perennial biofuel grasses requires
realistic understanding of the important processes affecting
adaptation and consequently biomass production.
Methods
In 2009, we selected nine locations (Table 1) across the south-
central USA to capture a range of environmental conditions. In
2010, plots at an additional site, Booneville, AR, were also
established. At each site, five switchgrass ecotypes, Alamo,
Blackwell, Cave-in-Rock, Kanl ow,andShawnee
(Table 2) were sown from seed from Turner Seed,
Breckenridge, TX, 76424-8165. Seeding rate was 5.6 kg pure
live seed per hectare. Miscanthus plants (originally purchased
from Kurt Bluemel, www.kurtbl uemel .com/Mis canthus_
giganteus.html) in 4-l pots were transplanted into the plots.
Genetic analysis of the Miscanthus material used indicated that
the plant material was identical to the Illinois clone (Michael
Casler, personal communication). In spring 2009, all ecotypes
and species were planted in randomized complete block design
withsinglerow plots, 1 m apart and5 m long, withfour replicate
rows per plant variety. Harvest dates were chosen to establish
plant growth during the active growing portion of spring and
summer, with logistical constraints due to travel distances be-
tween plots. In 2010, plants were harvested once in June or July
at each location and again in October. In 2011, plants were
harvested three times at each location. These were in May or
June, July and August, September, or October. At each loca-
tion, weeds were controlled by use of pre- and postemergence
herbicides [Prowl H20 (pendimethalin: (N-(1-ethylpropyl)-
3,4-dimethyl-2,6-dinitrobenzenamine)) and 2,4-D-2,4-
dichlorophenoxyacetic acid], hoeing, and hand weeding.
Destructive harvests were taken during the growing seasons
in order to characterize plant growth. These harvests were all
taken from areas not previously harvested during the growing
season. Final yield was the biomass at the final harvest each
year. At each harvest, plant height, fresh and dry weights,
fraction intercepted photosynthetically acti ve radiation
(FIPAR), and leaf area index (LAI) were also measured. For
switchgrass ecotypes, 0.5 m of a row was harvested, while with
Miscanthus 1.0 m of a row (one plant) was harvested. The
samples were weighed for a total fresh weight. When the total
sample exceeded 1,000 g, a grab sample of 200500gwas
separated. Samples were dried at 66 °C in a forced-air oven until
the dry weight had stabilized. Measurements of FIPAR were
taken using an AccuPAR LP-80 Ceptometer (Decagon Devices,
Pullman,WA,USA)within2hofsolarnoon.Thesevaluesof
FIPAR consisted of multiple measurements with the light
sensor moving parallel to the row, in the area from mid-row
to mid-row. In this way, the pertinent ground area for each row
was sampled. Care was taken to avoid shadows from neigh-
boring rows. An external light source was used for concurrent
above and below values that were averaged for the row. Leaf
area of a subsample was measured with a LI-3100 Area Meter
(LI-COR Biosciences, Lincoln, NE, USA).
WUE and RUE were calculated using output from the
ALMANAC model [17]. The ALMANAC model was parame-
terized so that the actual LAI equaled the simulated LAI for the
first harvest date each year. We used only this early growth
interval for RUE and WUE calculations in an effort to minimize
the prevalent drought impacts evident at several of the sites in
these years. This avoided unrealistically low values of RUE and
WUE due to growth decreasing drastically due to drought. Daily
weather data at each site and (20092011) from National
Oceanic and Atmospheric Administration were used in the
model [29]. The RUE was calculated as the ratio of measured
dry matter over cumulative simulated intercepted PAR. The
WUE was calculated in terms of measured dry matter produced
per unit simulated water transpired [28
]. Plant dry weight was the
total
above-ground dry weight (cutting height, 0.1 m). Water use
was determined using the ALMANAC model to simulate the
amount of water transpired by plants during the growth period.
Final dry weights for each plant type as a function of latitude
were analyzed by regression with Statistical Analysis System
[32]. Firstly, within each year , the three upland types were
analyzed for significant different slopes and intercepts using
Table 1 Soil type, latitude, and
average annual precipitation for
10 locations
a
Obtained from US Climate Data
[29]
Location Soil type Latitude Precipitation
a
(mm)
Elsberry, MO Menfro silt loam 39.16 972
Columbia, MO Mexico silt loam 38.89 1,025
Mt. Vernon, MO Gerald silt loam 37.07 1,171
Stillwater, OK Kirkland silt loam 36.12 932
Fayetteville, AR Pickwick gravely loam 36.09 1,169
Booneville, AR Leadvale silt loam 35.09 1,213
Nacogdoches, TX Attoyac fine sandy loam 31.50 1,229
Temple, TX Houston black clay 31.04 910
Kingsville, TX Cranell sandy clay loam 27.54 736
Weslaco, TX Hidalgo sandy clay loam 26.22 645
278 Bioenerg. Res. (2013) 6:276291

Citations
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Journal ArticleDOI
TL;DR: A suite of warm-season grasses and associated management practices have been developed by researchers from the Agricultural Research Service of the US Department of Agriculture (USDA) and collaborators associated with USDA Regional Biomass Research Centers as discussed by the authors.
Abstract: Dedicated energy crops and crop residues will meet herbaceous feedstock demands for the new bioeconomy in the Central and Eastern USA. Perennial warm-season grasses and corn stover are well-suited to the eastern half of the USA and provide opportunities for expanding agricultural operations in the region. A suite of warm-season grasses and associated management practices have been developed by researchers from the Agricultural Research Service of the US Department of Agriculture (USDA) and collaborators associated with USDA Regional Biomass Research Centers. Second generation biofuel feedstocks provide an opportunity to increase the production of transportation fuels from recently fixed plant carbon rather than from fossil fuels. Although there is no “one-size-fits-all” bioenergy feedstock, crop residues like corn (Zea mays L.) stover are the most readily available bioenergy feedstocks. However, on marginally productive cropland, perennial grasses provide a feedstock supply while enhancing ecosystem services. Twenty-five years of research has demonstrated that perennial grasses like switchgrass (Panicum virgatum L.) are profitable and environmentally sustainable on marginally productive cropland in the western Corn Belt and Southeastern USA.

95 citations


Cites background from "Perennial Biomass Grasses and the M..."

  • ...As changes in climate increases the possibility of drought stress, ecotypes or cultivars with highWUE will be needed to maintain higher yields....

    [...]

  • ...ALMANAC was used to predict yield (3.8 to 20.9 Mg ha−1) and WUE of four switchgrass ecotypes at five sites across the Midwest [113, 114]....

    [...]

  • ...Not surprisingly, a majority of the candidate herbaceous feedstocks are warmseason (C4) grasses, primarily due to higher water use efficiency (WUE) and nitrogen use efficiency (NUE) compared to C3 grasses....

    [...]

  • ...Switchgrass growing in cooler climates flowered earlier had lower WUE and were shorter than fromwarmer sites [115]....

    [...]

  • ...Modeled WUE values (3 to 6 mg g−1) tended to match published empirically measured values, with lowland types having the greatest WUE [21, 113]....

    [...]

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TL;DR: The identification of genetic loci involved in different types of adaptations will help to understand the evolutionary mechanisms of diversification within P. virgatum and provide useful information for the breeding of high-yielding cultivars for different ecoregions.
Abstract: Determining the patterns and mechanisms of natural selection in the wild is of fundamental importance to understanding the differentiation of populations and the evolution of new species. However, it is often unknown the extent to which adaptive genetic variation is distributed among ecotypes between distinct habitats versus along large-scale geographic environmental gradients, such as those that track latitude. Classic studies of selection in the wild in switchgrass, Panicum virgatum, tested for adaptation at both of these levels of natural variation. Here we review what these field experiments and modern agronomic field trials have taught us about natural variation and selection at both the ecotype and environmental gradient levels in P. virgatum. With recent genome sequencing efforts in P. virgatum, it is poised to become an excellent system for understanding the adaptation of grassland species across the eastern half of North America. The identification of genetic loci involved in different ty...

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  • ...…have found that trade-offs are rare and that most loci have fitness effects in only one habitat (i.e., conditional neutrality), with no detectable effects in the alternative habitat (Gardner and Latta 2006; Verhoeven et al. 2008; Hall et al. 2010; Fournier-Level et al. 2011; Anderson et al. 2013)....

    [...]

  • ...In particular, it is unclear how often genetic trade-offs (i.e., antagonistic pleiotropy) at individual loci underlie the overall pattern of local adaptation (Anderson et al. 2011, 2013; Colautti et al. 2012; Lowry 2012b; Des Marais et al. 2013)....

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TL;DR: It is demonstrated that drought responsive gene expression depends strongly on time of day and that gene expression is extensively modified during the first few hours of drought recovery.
Abstract: In light of the changes in precipitation and soil water availability expected with climate change, understanding the mechanisms underlying plant responses to water deficit is essential. Toward that end we have conducted an integrative analysis of responses to drought stress in the perennial C4 grass and biofuel crop, Panicum virgatum (switchgrass). Responses to soil drying and re-watering were measured at transcriptional, physiological, and metabolomic levels. To assess the interaction of soil moisture with diel light: dark cycles, we profiled gene expression in drought and control treatments under pre-dawn and mid-day conditions. Soil drying resulted in reduced leaf water potential, gas exchange, and chlorophyll fluorescence along with differential expression of a large fraction of the transcriptome (37%). Many transcripts responded differently depending on time of day (e.g. up-regulation pre-dawn and down-regulation mid-day). Genes associated with C4 photosynthesis were down-regulated during drought, while C4 metabolic intermediates accumulated. Rapid changes in gene expression were observed during recovery from drought, along with increased water use efficiency and chlorophyll fluorescence. Our findings demonstrate that drought responsive gene expression depends strongly on time of day and that gene expression is extensively modified during the first few hours of drought recovery. Analysis of covariation in gene expression, metabolite abundance, and physiology among plants revealed non-linear relationships that suggest critical thresholds in drought stress responses. Future studies may benefit from evaluating these thresholds among diverse accessions of switchgrass and other C4 grasses.

84 citations

Journal ArticleDOI
TL;DR: This study was the first instance of any genetically engineered trait in switchgrass, in which experimental plants were allowed to flower in the field in the eastern U.S., and it is proposed that induced miR156 expression could be further developed as a transgenic switchgrass bioconfinement tool to enable eventual commercialization.
Abstract: Genetic engineering has been effective in altering cell walls for biofuel production in the bioenergy crop, switchgrass (Panicum virgatum). However, regulatory issues arising from gene flow may prevent commercialization of engineered switchgrass in the eastern United States where the species is native. Depending on its expression level, microRNA156 (miR156) can reduce, delay, or eliminate flowering, which may serve to decrease transgene flow. In this unique field study of transgenic switchgrass that was permitted to flower, two low (T14 and T35) and two medium (T27 and T37) miR156-overexpressing ‘Alamo’ lines with the transgene under the control of the constitutive maize (Zea mays) ubiquitin 1 promoter, along with nontransgenic control plants, were grown in eastern Tennessee over two seasons. miR156 expression was positively associated with decreased and delayed flowering in switchgrass. Line T27 did not flower during the 2-year study. Line T37 did flower, but not all plants produced panicles. Flowering was delayed in T37, resulting in 70.6% fewer flowers than controls during the second field year with commensurate decreased seed yield: 1205 seeds per plant vs. 18,539 produced by each control. These results are notable given that line T37 produced equivalent vegetative aboveground biomass to the controls. miR156 transcript abundance of field-grown plants was congruent with greenhouse results. The five miR156 SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) target genes had suppressed expression in one or more of the transgenic lines. Line T27, which had the highest miR156 overexpression, showed significant downregulation for all five SPL genes. On the contrary, line T35 had the lowest miR156 overexpression and had no significant change in any of the five SPL genes. Because of the research field’s geographical features, this study was the first instance of any genetically engineered trait in switchgrass, in which experimental plants were allowed to flower in the field in the eastern U.S.; USDA-APHIS-BRS regulators allowed open flowering. We found that medium overexpression of miR156, e.g., line T37, resulted in delayed and reduced flowering accompanied by high biomass production. We propose that induced miR156 expression could be further developed as a transgenic switchgrass bioconfinement tool to enable eventual commercialization.

69 citations

Journal ArticleDOI
TL;DR: It is demonstrated that beneficial biomass (fitness) QTL generally incur minimal costs when transplanted to other field sites distributed over a large climatic gradient over the 2 y of this study, and locally advantageous alleles could potentially be combined across multiple loci through breeding to create high-yielding regionally adapted cultivars.
Abstract: Local adaptation is the process by which natural selection drives adaptive phenotypic divergence across environmental gradients. Theory suggests that local adaptation results from genetic trade-offs at individual genetic loci, where adaptation to one set of environmental conditions results in a cost to fitness in alternative environments. However, the degree to which there are costs associated with local adaptation is poorly understood because most of these experiments rely on two-site reciprocal transplant experiments. Here, we quantify the benefits and costs of locally adaptive loci across 17° of latitude in a four-grandparent outbred mapping population in outcrossing switchgrass (Panicum virgatum L.), an emerging biofuel crop and dominant tallgrass species. We conducted quantitative trait locus (QTL) mapping across 10 sites, ranging from Texas to South Dakota. This analysis revealed that beneficial biomass (fitness) QTL generally incur minimal costs when transplanted to other field sites distributed over a large climatic gradient over the 2 y of our study. Therefore, locally advantageous alleles could potentially be combined across multiple loci through breeding to create high-yielding regionally adapted cultivars.

68 citations

References
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TL;DR: A conceptual, continuous time model called SWAT (Soil and Water Assessment Tool) was developed to assist water resource managers in assessing the impact of management on water supplies and nonpoint source pollution in watersheds and large river basins as discussed by the authors.
Abstract: A conceptual, continuous time model called SWAT (Soil and Water Assessment Tool) was developed to assist water resource managers in assessing the impact of management on water supplies and nonpoint source pollution in watersheds and large river basins. The model is currently being utilized in several large area projects by EPA, NOAA, NRCS and others to estimate the off-site impacts of climate and management on water use, nonpoint source loadings, and pesticide contamination. Model development, operation, limitations, and assumptions are discussed and components of the model are described. In Part II, a GIS input/output interface is presented along with model validation on three basins within the Upper Trinity basin in Texas.

6,674 citations


"Perennial Biomass Grasses and the M..." refers background in this paper

  • ...Process-based models such as Agricultural Land Management Alternatives with Numerical Assessment Criteria (ALMANAC) [17], Environmental Policy Integrated Climate (SWAT) [35, 36], and Soil and Water Assessment Tool (EPIC) [2] provide realistic simulation of biofuel plant species for assessing management practices that maximize C....

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  • ...Process-based models such as Agricultural Land Management Alternatives with Numerical Assessment Criteria (ALMANAC) [17], Environmental Policy Integrated Climate (SWAT) [35, 36], and Soil and Water Assessment Tool (EPIC) [2] provide realistic simulation of biofuel plant species for assessing management practices that maximize C. West Texas Tech University, Lubbock, formerly with University of Arkansas, Fayetteville, AR, USA Y. Wu Oklahoma State University, Stillwater, OK, USA L. Zibilske formerly with USDA-ARS, Weslaco, TX, USA production and minimize environmental impact....

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Book
01 Jan 1974

2,486 citations


"Perennial Biomass Grasses and the M..." refers methods in this paper

  • ...indicator variables [27], comparing both Cave-in-Rock and Blackwell to Sunburst....

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01 Jan 1986
TL;DR: The Crop Environment Resource Synthesis (CERES) Maize model as discussed by the authors was developed at the United States Department of Agriculture (USDA) at the Grassland, Soil and Water Research Laboratory at the University of Michigan State University.
Abstract: PrefaceDuring the last 20 years rapid progress has been made in the simulation of agricultural processes. A number of models are now available to simulate processes such as weather, hydrology, nutrient cycling and movement, tillage, soil erosion, soil temperature, and crop growth and development. Many of these models are quite restricted in purpose, simulating only discrete processes such as denitrification, leaching of NO3, soil temperature, or the movement of water in the soil. Others integrate several of these processes. During the last few years more comprehensive agricultural simulation models have begun to appear. These models simulate a number of processes and predict their interacting effects on crop growth and yield. As more and more processes are simulated, model development and testing require the expertise of an increased number of scientific disciplines and more teamwork and organization. Modeling comprehensive agricultural systems is rapidly becoming a team effort involving scientists around the world and demanding well-integrated networks to exchange both experimental data and software.This book provides the documentation, testing, and software of CERES-Maize, a quite comprehensive model of maize (Zea mays L.) growth and development. Two versions of the model are provided. The standard version considers the independent and interacting effects of genotype, weather, and hydrology. The nitrogen version considers those factors as well as nitrogen nutrition. The development of the Crop-Environment Resource Synthesis (CERES) Maize model was coordinated by Dr. J. T. Ritchie at the Grassland, Soil and Water Research Laboratory of the United States Department of Agriculture, Agricultural Research Service (USDA-ARS). Dr. Ritchie was responsible for the conceptual development o f the model as well as many of the subroutines and much of the detailed FORTRAN code. However, he was aided by a large, informal network of experimental scientists and modelers from throughout the world. These cooperators are acknowledged in the text, but it is appropriate to point out here that their ideas, data, and constructive suggestions were indispensable.Shortly before completion and final testing of the CERES-Maize model, Dr. Ritchie left ARS for a position at Michigan State University. Final modifications and testing were completed by the editors.

1,304 citations


"Perennial Biomass Grasses and the M..." refers methods in this paper

  • ...Photoperiod was calculated at 30 days after the estimated green-up date using standard equations based on latitude and day of the year, as described in the CERES-Maize book [15]....

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Journal ArticleDOI
TL;DR: A 10-year US Department of Energy sponsored research program designed to evaluate and develop switchgrass ( Panicum virgatum ), a native perennial warm-season grass, as a dedicated energy crop is reviewed in this paper.
Abstract: A 10-year US Department of Energy-sponsored research program designed to evaluate and develop switchgrass ( Panicum virgatum ), a native perennial warm-season grass, as a dedicated energy crop is reviewed. The programmatic objectives were to identify the best varieties and management practices to optimize productivity, while developing an understanding of the basis for long-term improvement of switchgrass through breeding and sustainable production in conventional agroecosystems. This research has reduced the projected production cost of switchgrass by about 25% ($8–9 Mg −1 ) through yield increases of about 50% achieved through selection of the best regionally adapted varieties; through optimizing cutting frequency and timing; and by reducing the level (by about 40%) and timing of nitrogen fertilization. Breeding research has made further gains in productivity of switchgrass that exceed the historical rate of yield improvement of corn. Studies of soil carbon storage under switchgrass indicate significant carbon sequestration will occur in soils that will improve soil productivity and nutrient cycling and can substantially augment greenhouse gas reductions associated with substituting renewable energy for fossil energy. Collaborative research with industry has included fuel production and handling in power production, herbicide testing and licensing, release of new cultivars, and genetic modifications for chemical coproduct enhancement. Economically based life cycle analyses based on this research suggest that switchgrass produced for energy will compete favorably both as an agricultural crop and as fuel for industry.

1,062 citations


"Perennial Biomass Grasses and the M..." refers background in this paper

  • ...The group with high RUE were generally similar to high values published previously, with 4.5 for Alamo switchgrass in Texas [18], 4.3 for Alamo switchgrass in Elsberry, MO, USA [20], 3.7 for Miscanthus in Illinois [14], and 3.7 forMiscanthus in Elsberry,MO, USA [20]....

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  • ...J. R. Kiniry (*) :K. D. Behrman : P. A. Fay USDA-ARS, Temple, TX, USA e-mail: Jim.Kiniry@ARS.USDA.GOV L. C. Anderson :K. D. Behrman formerly with University of Texas, Austin, TX, USA M.-V. V. Johnson USDA-NRCS, Temple, TX, USA M. Brakie :A. Shadow USDA-NRCS East Texas Plant Materials Center, Nacogdoches, TX, USA D. Burner USDA-ARS, Houoma, LA, USA D. Burner formerly USDA-ARS, Booneville, AR, USA R. Raper Oklahoma State University, Stillwater, formerly USDA-ARS, Booneville, AR, USA R. L. Cordsiemon : J. Kaiser USDA-NRCS Elsberry Plant Materials Center, Elsberry, MO, USA F. B. Fritschi : J. H. Houx III University of Missouri, Columbia, MO, USA C. Hawkes : T. Juenger : T. H. Keitt University of Texas, Austin, TX, USA J. Lloyd-Reilley : S. Maher USDA-NRCS Kika de la Garza Plant Materials Center, Kingsville, TX, USA A. Scott Rio Farms, Inc., Monte Alto, TX, USA switchgrass had the greatest radiation use efficiency (RUE) with a mean of 4.3 g per megajoule intercepted PAR and water use efficiency (WUE) with a mean of 4.5 mg of dry weight per gram of water transpired....

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  • ...Measurements of WUE on single leaves indicate that switchgrass, as expected, uses relatively low levels of water, and that the highest yielding switchgrass varieties have the highest water use efficiencies [23]....

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  • ...showing that lowland ecotypes “Alamo” and “Kanlow” were higher yielding than various upland ecotypes (“Cavein-Rock” and “Shelter”) in Virginia, Tennessee, Iowa, West Virginia, Kentucky, North Carolina, Alabama, Georgia, and Texas [13, 21, 23, 33]....

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  • ...Leaf area and yield were measured on plots at 10 locations in Missouri, Arkansas, Oklahoma, and Texas....

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Frequently Asked Questions (1)
Q1. What are the contributions mentioned in the paper "Perennial biomass grasses and the mason–dixon line: comparative productivity across latitudes in the southern great plains" ?

The objectives of this study were: ( 1 ) to quantify latitudinal variation in production of representative upland switchgrass ecotypes ( Blackwell, Cave-in-Rock, and Shawnee ), lowland switchgrass ecotypes ( Alamo, Kanlow ), and Miscanthus in the southern half of the US Great Plains and ( 2 ) to investigate the environmental factors affecting yield variation. The online version of this article ( doi:10.