Performance comparison of exome DNA sequencing technologies
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Cites methods from "Performance comparison of exome DNA..."
...…platform for hybrid selections, we expect that similar hybridization-based target enrichment systems, such as the Illumina TruSeq Enrichment kits (Clark et al. 2011), the Roche/NimbleGen SeqCap EZ Hybridization kits, and array-based hybridization (Hodges et al. 2007), would enrich multiplexed…...
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...…either by comparing variant calls from different pipelines, or by comparing calls to variants ascertained with array genotyping or in another study (Clark et al., 2011; Li, 2012; Lam et al., 2012a,b; Boland et al., 2013; Liu et al., 2013; Goode et al., 2013; O’Rawe et al., 2013; Zook et al., 2014;…...
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References
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"Performance comparison of exome DNA..." refers methods in this paper
...3%) Aligned reads were processed and sorted with SAMtool...
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"Performance comparison of exome DNA..." refers methods in this paper
...To evaluate SNV detection performance, we called variants in each normalized data set using the Genome Analysis Toolkit (GATK...
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"Performance comparison of exome DNA..." refers background in this paper
...We first examined coverage of major RNA databases—RefSeq (coding and untranslated region (UTR)), Ensembl (total and coding sequence (CDS)) and the microRNA (miRNA) database miRBas...
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