Plant growth promoting rhizobacteria and endophytes accelerate phytoremediation of metalliferous soils
TL;DR: The role of plant growth promoting rhizo- and/or endophytic bacteria in accelerating phytoremediation derived benefits in extensive tables and elaborate schematic sketches is highlighted.
About: This article is published in Biotechnology Advances.The article was published on 2011-03-01. It has received 966 citations till now. The article focuses on the topics: Phytoextraction process & Phytoremediation.
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TL;DR: There is growing scientific evidence supporting the use of biostimulants as agricultural inputs on diverse plant species, such as increased root growth, enhanced nutrient uptake, and stress tolerance.
Abstract: Plant biostimulants are diverse substances and microorganisms used to enhance plant growth. The global market for biostimulants is projected to increase 12 % per year and reach over $2,200 million by 2018. Despite the growing use of biostimulants in agriculture, many in the scientific community consider biostimulants to be lacking peer-reviewed scientific evaluation. This article describes the emerging definitions of biostimulants and reviews the literature on five categories of biostimulants: i. microbial inoculants, ii. humic acids, iii. fulvic acids, iv. protein hydrolysates and amino acids, and v. seaweed extracts. The large number of publications cited for each category of biostimulants demonstrates that there is growing scientific evidence supporting the use of biostimulants as agricultural inputs on diverse plant species. The cited literature also reveals some commonalities in plant responses to different biostimulants, such as increased root growth, enhanced nutrient uptake, and stress tolerance.
1,305 citations
Cites background from "Plant growth promoting rhizobacteri..."
...…is the major component of the phytoremediation processes, and application of microbial inoculants in bioremediation of contaminated soil and reforestation of degraded lands is a promising research area (deBashan et al. 2010a; 2010b; 2012; Grandlic et al. 2008; Kuiper et al. 2004; Ma et al. 2011)....
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...The plant is the major component of the phytoremediation processes, and application of microbial inoculants in bioremediation of contaminated soil and reforestation of degraded lands is a promising research area (deBashan et al. 2010a; 2010b; 2012; Grandlic et al. 2008; Kuiper et al. 2004; Ma et al. 2011)....
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Journal Article•
TL;DR: This work found significant variation in Arabidopsis thaliana ecotypes in accumulation and tolerance of Pb, and screened ethyl methanesulfonate-mutagenized M2 populations and identified several Pb-accumulating mutants.
Abstract: In addition to the often-cited advantages of using Arabidopsis thaliana as a model system in plant biological research (1), Arabidopsis has many additional characteristics that make it an attractive experimental organism for studying lea d (Pb) accumulation and tolerance in plants. These include its fortuitous familial relationship to many known metal hyperaccumulators (Brassicaceae), as well as similar Pbaccumulation patterns to most other plants. Using nutrient-agar plates, hydroponic culture, and Pb-contaminated soils as growth media, we found significant variation in Arabidopsis thaliana ecotypes in accumulation and tolerance of Pb. In addition, we have found that Pb accumulation is not obligatorily linked with Pb tolerance, suggesti ng that different genetic factors control these two processes. We also screened ethyl methanesulfonate-mutagenized M2 populations and identified several Pb-accumulating mutants. Current characterization of these mutants indicates that their phenotypes are likely due to alteration of general metal ion uptake or translocation processes since these mutants also accumulate many other metals in shoots. We expect that further characterization of the ecotypes and mutants will shed light on the basic genetic and physiological underpinnings of plant-based Pb remediation. 7. Aromatic nitroreduction of acifluorfen in soils, rhizospheres, and pure cultures of rhizobacteria. Zablotowicz, R. M., Locke, M. A., and Hoagland, R. E. Phytoremediation of soil and water contaminants. Washington, DC : American Chemical Society, 1997. p. 38-53. NAL Call #: QD1.A45-no.664 Abstract: Reduction of nitroaromatic compounds to their corresponding amino derivatives is one of several pathways in the degradation of nitroxenobiotics. Our studies with the nitrodiphenyl ether herbicide acifluorfen showed rapid metabolism to am inoacifluorfen followed by incorporation into unextractable soil components in both soil and rhizosphere suspensions. Aminoacifluorfen was formed more rapidly in rhizospheres compared to soil, which can be attributed to higher microbial populations, espec ially of Gram-negative bacteria. We identified several strains of Pseudomonas fluorescens that possess nitroreductase activity capable of converting acifluorfen to aminoacifluorfen. Factors affecting acifluorfen nitroreductase activity in pure cultures an d cell-free extracts, and other catabolic transformations of acifluorfen, ether bond cleavage, are discussed. Plant rhizospheres should be conducive for aromatic nitroreduction. Nitroreduction by rhizobacteria is an important catabolic pathway for the ini tial degradation of various nitroherbicides and other nitroaromatic compounds in soils under Reduction of nitroaromatic compounds to their corresponding amino derivatives is one of several pathways in the degradation of nitroxenobiotics. Our studies with the nitrodiphenyl ether herbicide acifluorfen showed rapid metabolism to am inoacifluorfen followed by incorporation into unextractable soil components in both soil and rhizosphere suspensions. Aminoacifluorfen was formed more rapidly in rhizospheres compared to soil, which can be attributed to higher microbial populations, espec ially of Gram-negative bacteria. We identified several strains of Pseudomonas fluorescens that possess nitroreductase activity capable of converting acifluorfen to aminoacifluorfen. Factors affecting acifluorfen nitroreductase activity in pure cultures an d cell-free extracts, and other catabolic transformations of acifluorfen, ether bond cleavage, are discussed. Plant rhizospheres should be conducive for aromatic nitroreduction. Nitroreduction by rhizobacteria is an important catabolic pathway for the ini tial degradation of various nitroherbicides and other nitroaromatic compounds in soils under phytoremediation management. 8. Ascorbate: a biomarker of herbicide stress in wetland plants. Lytle, T. F. and Lytle, J. S. Phytoremediation of soil and water contaminants. Washington, DC : American Chemical Society, 1997. p. 106-113. NAL Call #: QD1.A45-no.664 Abstract: In laboratory exposures of wetland plants to low herbicide levels (<0.1 micrograms/mL), some plants showed increased total ascorbic acid suggesting a stimulatory effect on ascorbic acid synthesis occurred; at higher herbicide conce ntrations (greater than or equal to 0.1 micrograms/mL) a notable decline in total ascorbic acid and increase in the oxidized form, dehydroascorbic acid occurred. Vigna luteola and Sesbania vesicaria were exposed for 7 and 21 days respectively to atrazine (0.05 to 1 microgram/mL); Spartina alterniflora 28 days at 0.1 micrograms/mL trifluralin; Hibiscus moscheutos 14 days at 0.1 and 1 microgram/mL metolachlor in fresh and brackish water. The greatest increase following low dosage occurred with S. alterniflo ra, increasing from <600 micrograms/g wet wt. total ascorbic acid to >1000 micrograms/g. Ascorbic acid may be a promising biomarker of estuarine plants exposed to herbicide runoff; stimulation of ascorbic acid synthesis may enable some wetland plant s used in phytoremediation to cope with low levels of these compounds. In laboratory exposures of wetland plants to low herbicide levels (<0.1 micrograms/mL), some plants showed increased total ascorbic acid suggesting a stimulatory effect on ascorbic acid synthesis occurred; at higher herbicide conce ntrations (greater than or equal to 0.1 micrograms/mL) a notable decline in total ascorbic acid and increase in the oxidized form, dehydroascorbic acid occurred. Vigna luteola and Sesbania vesicaria were exposed for 7 and 21 days respectively to atrazine (0.05 to 1 microgram/mL); Spartina alterniflora 28 days at 0.1 micrograms/mL trifluralin; Hibiscus moscheutos 14 days at 0.1 and 1 microgram/mL metolachlor in fresh and brackish water. The greatest increase following low dosage occurred with S. alterniflo ra, increasing from <600 micrograms/g wet wt. total ascorbic acid to >1000 micrograms/g. Ascorbic acid may be a promising biomarker of estuarine plants exposed to herbicide runoff; stimulation of ascorbic acid synthesis may enable some wetland plant s used in phytoremediation to cope with low levels of these compounds. 9. Atmospheric nitrogenous compounds and ozone--is NO(x) fixation by plants a possible solution. Wellburn, A. R. New phytol. 139: 1 pp. 5-9. (May 1998). NAL Call #: 450-N42 Descriptors: ozoneair-pollution nitrogen-dioxide nitric-oxide air-quality tolerancebioremediationacclimatizationnutrient-sources nutrient-uptake plantscultivarsgenetic-variation literature-reviews 10. Atrazine degradation in pesticide-contaminated soils: phytoremediation potential. Kruger, E. L., Anhalt, J. C., Sorenson, D., Nelson, B., Chouhy, A. L., Anderson, T. A., and Coats, J. R. Phytoremediation of soil and water contaminants. Washington, DC : American Chemical Society, 1997. p. 54-64. NAL Call #: QD1.A45-no. 664 Abstract: Studies were conducted in the laboratory to determine the fate of atrazine in pesticide-contaminated soils from agrochemical dealer sites. No significant differences in atrazine concentrations occurred in soils treated with atrazine i ndividually or combinations with metolachlor and trifluralin. In a screening study carried out in soils from four agrochemical dealer sites, rapid mineralization of atrazine occurred in three out of eight soils tested, with the greatest amount occurring i n Bravo rhizosphere soil (35% of the applied atrazine after 9 weeks). Suppression of atrazine mineralization in the Bravo rhizosphere soil did not occur with the addition of high concentrations of herbicide mixtures, but instead was increased. Plants had a positive impact on dissipation of aged Studies were conducted in the laboratory to determine the fate of atrazine in pesticide-contaminated soils from agrochemical dealer sites. No significant differences in atrazine concentrations occurred in soils treated with atrazine i ndividually or combinations with metolachlor and trifluralin. In a screening study carried out in soils from four agrochemical dealer sites, rapid mineralization of atrazine occurred in three out of eight soils tested, with the greatest amount occurring i n Bravo rhizosphere soil (35% of the applied atrazine after 9 weeks). Suppression of atrazine mineralization in the Bravo rhizosphere soil did not occur with the addition of high concentrations of herbicide mixtures, but instead was increased. Plants had a positive impact on dissipation of aged atrazine in soil, with significantly less atrazine extractable from Kochia-vegetated soils than from nonvegetated soils. 11. Bacterial inoculants of forage grasses that enhance degradation of 2-chlorobenzoic acid in soil. Siciliano, S. D. and Germida, J. J. Environ toxicol chem. 16: 6 pp. 1098-1104. (June 1997). NAL Call #: QH545.A1E58 Descriptors: polluted-soils bioremediationAbstract: Biological remediation of contaminated soil is an effective method of reducing risk to human and ecosystem health. Bacteria and plants might be used to enhance remediation of soil pollutants in situ. This study assessed the potential of bacteria (12 isolates), plants (16 forage grasses), and plant-bacteria associations (selected pairings) to remediate 2-chlorobenzoic acid (2CBA)-contaminated soil. Initially, grass viability was assessed in 2CBA-contaminated soil. Soil was contaminated wi th 2CBA, forage grasses were grown under growth chamber conditions for 42 or 60 d, and the 2CBA concentration in soil was determined by gas chromatography. Only five of 16 forage grasses grew in 2CBA-treated (816 mg/kg) soil. Growth of Bromus inermis had no effect on 2CBA concentration, whereas Agropyron intermedium, B. biebersteinii, A. riparum, and Elymus dauricus decreased 2CBA relative to nonplanted control soil by 32 to 42%. The 12 bacteria isolates were screened for their ability to promote the germ ination of the five grasses in 2CBA-contaminated soil. Inoculation of A. riparum with Pseudomonas aeruginos
1,049 citations
TL;DR: In this article, a review of the abilities of microorganisms and plants in terms of tolerance and degradation of heavy metals is presented, with special reference to the genomics of heavy metal accumulator plants and the identification of functional genes involved in tolerance and detoxification.
Abstract: Heavy metals are natural constituents of the environment, but indiscriminate use for human purposes has altered their geochemical cycles and biochemical balance. This results in excess release of heavy metals such as cadmium, copper, lead, nickel, zinc etc. into natural resources like the soil and aquatic environments. Prolonged exposure and higher accumulation of such heavy metals can have deleterious health effects on human life and aquatic biota. The role of microorganisms and plants in biotransformation of heavy metals into nontoxic forms is well-documented, and understanding the molecular mechanism of metal accumulation has numerous biotechnological implications for bioremediation of metal-contaminated sites. In view of this, the present review investigates the abilities of microorganisms and plants in terms of tolerance and degradation of heavy metals. Also, advances in bioremediation technologies and strategies to explore these immense and valuable biological resources for bioremediation are discussed. An assessment of the current status of technology deployment and suggestions for future bioremediation research has also been included. Finally, there is a discussion of the genetic and molecular basis of metal tolerance in microbes, with special reference to the genomics of heavy metal accumulator plants and the identification of functional genes involved in tolerance and detoxification.
900 citations
TL;DR: How such processes influence heavy metal uptake through various biogeochemical processes including translocation, transformation, chelation, immobilization, solubilization, precipitation, volatilization and complexation of heavy metals ultimately facilitating phytoremediation is illustrated.
752 citations
Cites background or result from "Plant growth promoting rhizobacteri..."
...…of microbe-mediated processes, in which the microbial metabolites/processes in the rhizosphere affect plant metal uptake by altering the mobility and bioavailabity (Wenzel, 2009; Glick, 2010; Rajkumar et al., 2010; Ma et al., 2011a; Miransari, 2011; Aafi et al., 2012; Yang et al., 2012)....
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...…growth of the plant in metal contaminated soils (Wu et al., 2006; Glick et al., 2007; Lebeau et al., 2008; Glick, 2010; Rajkumar et al., 2010; Kuffner et al., AC C EP TE D M AN U SC R IP T 2010; Babu and Reddy, 2011; Ma et al., 2011a,b; Miransari, 2011; Wang et al., 2011; Luo et al., 2011, 2012)....
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...…toxicity and to yield adequate biomass, the plant growth promoting microbes have attracted much attention from many researchers as rhizosphere/seed inoculums (Rajkumar and Freitas, 2008; Sheng et al., 2008a,b; Kuffner et al., 2010; Ma et al., 2010, 2011b; Maria et al., 2011; Aafi et al., 2012)....
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...We have also observed similar results in the case of Allysusm serpyllifolium and B. juncea growth under Ni stress in response to inoculation with ACC deaminase producing endophytic bacteria (Ma et al., 2011b)....
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...…soil, recycle the nutrients, improve plant health and control plant pathogens (Lebeau et al., 2008; Sheng et al., 2008a; Glick 2010; Hayat et al., 2010; Kuffner et al., 2010; Rajkumar et al., 2010; Ma et al., 2011a; Miransari, 2011; Orłowska et al., 2011; Wu et al., 2011a; Aafi et al., 2012) (Fig....
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TL;DR: The key mechanisms involved in plant stress tolerance and the effectiveness of microbial inoculation for enhancing plant growth under stress conditions have been discussed at length in this review.
727 citations
Cites background from "Plant growth promoting rhizobacteri..."
...…plant tolerance against salinity, drought, flooding, and heavy metal toxicity and, therefore, enable plants to survive under unfavorable environmental conditions (Belimov et al., 2001; Glick, 2010; Ma et al., 2011; Mayak et al., 2004b; Nadeem et al., 2007; Sandhya et al., 2009; Zahir et al., 2008)....
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References
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Book•
17 Mar 1994
TL;DR: In this article, an introduction to modern soil chemistry describes chemical processes in soils in terms of established principles of inorganic, organic, and physical chemistry, providing an understanding of the structure of the solid mineral and organic materials from which soils are formed.
Abstract: This introduction to modern soil chemistry describes chemical processes in soils in terms of established principles of inorganic, organic, and physical chemistry. The text provides an understanding of the structure of the solid mineral and organic materials from which soils are formed, and explains such important processes as cation exchange, chemisorption and physical absorption of organic and inorganic ions and molecules, soil acidification and weathering, oxidation-reduction reactions, and development of soil alkalinity and swelling properties. Environmental rather than agricultural topics are emphasized, with individual chapters on such pollutants as heavy metals, trace elements, and inorganic chemicals.
6,735 citations
"Plant growth promoting rhizobacteri..." refers background in this paper
...…the rhizosphere greatly influences the quantity of metal accumulation in plants, because a large proportion of heavy metals are generally bound to various organic and inorganic constituents in polluted soil and their phytoavailability is closely related to their chemical speciation (McBride, 1994)....
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TL;DR: This review restricts itself to bacteria that are derived from and exert this effect on the root and generally designated as PGPR (plant-growth-promoting rhizobacteria), which can be direct or indirect in their effects on plant growth.
Abstract: Several microbes promote plant growth, and many microbial products that stimulate plant growth have been marketed. In this review we restrict ourselves to bacteria that are derived from and exert this effect on the root. Such bacteria are generally designated as PGPR (plant-growth-promoting rhizobacteria). The beneficial effects of these rhizobacteria on plant growth can be direct or indirect. This review begins with describing the conditions under which bacteria live in the rhizosphere. To exert their beneficial effects, bacteria usually must colonize the root surface efficiently. Therefore, bacterial traits required for root colonization are subsequently described. Finally, several mechanisms by which microbes can act beneficially on plant growth are described. Examples of direct plant growth promotion that are discussed include (a) biofertilization, (b) stimulation of root growth, (c) rhizoremediation, and (d) plant stress control. Mechanisms of biological control by which rhizobacteria can promote plant growth indirectly, i.e., by reducing the level of disease, include antibiosis, induction of systemic resistance, and competition for nutrients and niches.
3,761 citations
TL;DR: Recent advances in elucidating the role of root exudates in interactions between plant roots and other plants, microbes, and nematodes present in the rhizosphere are described.
Abstract: The rhizosphere encompasses the millimeters of soil surrounding a plant root where complex biological and ecological processes occur. This review describes recent advances in elucidating the role of root exudates in interactions between plant roots and other plants, microbes, and nematodes present in the rhizosphere. Evidence indicating that root exudates may take part in the signaling events that initiate the execution of these interactions is also presented. Various positive and negative plant-plant and plant-microbe interactions are highlighted and described from the molecular to the ecosystem scale. Furthermore, methodologies to address these interactions under laboratory conditions are presented.
3,674 citations
"Plant growth promoting rhizobacteri..." refers background in this paper
...wayor theother, although thismay vary as a result of a range of different rhizosphere soil conditions including organic matter, pH, temperature, nutrients, and pollutants level (Glick, 2003; Bais et al., 2006)....
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...…and organics (pesticides, solvents, explosives, crude oil, polyaromatic hydrocarbons). wayor theother, although thismay vary as a result of a range of different rhizosphere soil conditions including organic matter, pH, temperature, nutrients, and pollutants level (Glick, 2003; Bais et al., 2006)....
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...In particular because both pathogenic and non-pathogenic microbes depend on the properties of surrounding environment (rhizosphere/tissue interior of plants) for much of their growth and nutrition (Walker et al., 2003; Bais et al., 2006) and since these plant-associated microbes may modulate responses to direct and/or indirect (e....
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...…on the properties of surrounding environment (rhizosphere/tissue interior of plants) for much of their growth and nutrition (Walker et al., 2003; Bais et al., 2006) and since these plant-associated microbes may modulate responses to direct and/or indirect (e.g., heavy metal induced resistance…...
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TL;DR: Overall, this review shows that soil microbes must be considered as important drivers of plant diversity and productivity in terrestrial ecosystems.
Abstract: Microbes are the unseen majority in soil and comprise a large portion of lifes genetic diversity. Despite their abundance, the impact of soil microbes on ecosystem processes is still poorly understood. Here we explore the various roles that soil microbes play in terrestrial ecosystems with special emphasis on their contribution to plant productivity and diversity. Soil microbes are important regulators of plant productivity, especially in nutrient poor ecosystems where plant symbionts are responsible for the acquisition of limiting nutrients. Mycorrhizal fungi and nitrogenfixing bacteria are responsible for c. 5‐20% (grassland and savannah) to 80% (temperate and boreal forests) of all nitrogen, and up to 75% of phosphorus, that is acquired by plants annually. Free-living microbes also strongly regulate plant productivity, through the mineralization of, and competition for, nutrients that sustain plant productivity. Soil microbes, including microbial pathogens, are also important regulators of plant community dynamics and plant diversity, determining plant abundance and, in some cases, facilitating invasion by exotic plants. Conservative estimates suggest that c. 20 000 plant species are completely dependent on microbial symbionts for growth and survival pointing to the importance of soil microbes as regulators of plant species richness on Earth. Overall, this review shows that soil microbes must be considered as important drivers of plant diversity and productivity in terrestrial ecosystems.
3,673 citations
"Plant growth promoting rhizobacteri..." refers background in this paper
...…can either convert these insoluble phosphates into available forms through acidification, chelation, exchange reactions, and release of organic acids (Chung et al., 2005) ormineralize organic phosphates by secreting extracellular phosphatases (Gyaneshwar et al., 2002; van der Heijden et al., 2008)....
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TL;DR: This review focuses on the known, the putative, and the speculative modes-of-action of PGPR, which include fixing N2, increasing the availability of nutrients in the rhizosphere, positively influencing root growth and morphology, and promoting other beneficial plant–microbe symbioses.
Abstract: Numerous species of soil bacteria which flourish in the rhizosphere of plants, but which may grow in, on, or around plant tissues, stimulate plant growth by a plethora of mechanisms. These bacteria are collectively known as PGPR (plant growth promoting rhizobacteria). The search for PGPR and investigation of their modes of action are increasing at a rapid pace as efforts are made to exploit them commercially as biofertilizers. After an initial clarification of the term biofertilizers and the nature of associations between PGPR and plants (i.e., endophytic versus rhizospheric), this review focuses on the known, the putative, and the speculative modes-of-action of PGPR. These modes of action include fixing N2, increasing the availability of nutrients in the rhizosphere, positively influencing root growth and morphology, and promoting other beneficial plant–microbe symbioses. The combination of these modes of actions in PGPR is also addressed, as well as the challenges facing the more widespread utilization of PGPR as biofertilizers.
2,982 citations
"Plant growth promoting rhizobacteri..." refers background in this paper
...…(Chakraborty et al., 2006; Sikora et al., 2007), improved mineral uptake (Dimkpa et al., 2009a), associative nitrogen fixation (Dobbelaere et al., 2003), tolerance to abiotic stresses (Sziderics et al., 2007; Belimov et al., 2009;Dimkpa et al., 2009a), or production of phytohormones (Vessey, 2003)....
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